PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010536.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 931aa MW: 104971 Da PI: 7.9146

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010536.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.1	1.5e-20	548	593	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+ +++ + PCP010536.1 548 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVGIIVFSPGRRVFSF 593 599***********************************99888776 PP
2	SRF-TF	63.2	2.8e-20	747	787	5	45
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 n qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k PCP010536.1 747 KRNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPANK 787 56788*********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence
MFTSEPPSLN SLRYRASPKY LFFWFSMSSE SGASTSNGKA SEPNPNPDHT SKPPKAQLAA 60 LVLLEVNSHG NGVAHGSPAE NNHQEIENDK KEVQANSIAP GLAEVEEVSE GSPRGGVNGG 120 VVWARTNSKL EIDSSPSSNV VEERDNVDQG GEEGEVGGIE KEKREKSGKR DGLSMEKKFA 180 FMGHRRWLPM SHRFGNGARA NGRKRGWNDD GHVVGKTKDD IRIRADLVDL GIRHDLHPRV 240 DGARTKLLVT EYNMKPREKR MVVPDIIELD YHNGQKVILF DYDWFDVKSK RVINFKQMAN 300 LMLDDDALLA SMETQPHSQF GVVAPNEFAT YQPHNTCSGY TFGQAISPRD NVAGFGRYIT 360 MLARDGGLIP IDSPDWRQID SSKLDRVWFL VQAEEHDGSK PNRVTFFTMT HRRGPKQLPV 420 DVESARMMLA FESLEVEVWE RGEELGISRE VKYLREAYEA RKQATAVAEE KMTRMMHEAH 480 EKAKKMKREQ EETIQRLRVE QEENLRLAKC GPPVSNAMMR EDCQNENIGL AMAKKSKGRQ 540 KVEMVKMANE SNLQVTFSKR RSGLFKKASE LCTLCGAEVG IIVFSPGRRV FSFGHPSVEA 600 VMDRFLSHDP FNPHLHPPSG TMQLIEAHRN ATVHELNTEL TQVMNQLEAE KKRRDQLNQM 660 TRVSQAQCWW EAPVDEMQMP QLDQLKSSLV DLKMNVTKQA DRVLIQNTLN PNSQFFVGSS 720 KKSTIYGDED QETSQGRQKI AIAKIPKRNN LQVTFSKRRS GLFKKASELC TLCGVEIAII 780 VFSPANKPFS FGHPEVDSIV DRFAARNPYP NFQAGSTGST QQRVEAHRNA SVHELNMRLT 840 QVVKQLEAEK NCGQALDKIS KASEKQCWWE RLVDELGFHE LQILKASMED LKKNVTKQAN 900 WILMESSAPA DAANCSSSSP FFHKEQWCCS T

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence

MFTSEPPSLN SLRYRASPKY LFFWFSMSSE SGASTSNGKA SEPNPNPDHT SKPPKAQLAA  60
LVLLEVNSHG NGVAHGSPAE NNHQEIENDK KEVQANSIAP GLAEVEEVSE GSPRGGVNGG  120
VVWARTNSKL EIDSSPSSNV VEERDNVDQG GEEGEVGGIE KEKREKSGKR DGLSMEKKFA  180
FMGHRRWLPM SHRFGNGARA NGRKRGWNDD GHVVGKTKDD IRIRADLVDL GIRHDLHPRV  240
DGARTKLLVT EYNMKPREKR MVVPDIIELD YHNGQKVILF DYDWFDVKSK RVINFKQMAN  300
LMLDDDALLA SMETQPHSQF GVVAPNEFAT YQPHNTCSGY TFGQAISPRD NVAGFGRYIT  360
MLARDGGLIP IDSPDWRQID SSKLDRVWFL VQAEEHDGSK PNRVTFFTMT HRRGPKQLPV  420
DVESARMMLA FESLEVEVWE RGEELGISRE VKYLREAYEA RKQATAVAEE KMTRMMHEAH  480
EKAKKMKREQ EETIQRLRVE QEENLRLAKC GPPVSNAMMR EDCQNENIGL AMAKKSKGRQ  540
KVEMVKMANE SNLQVTFSKR RSGLFKKASE LCTLCGAEVG IIVFSPGRRV FSFGHPSVEA  600
VMDRFLSHDP FNPHLHPPSG TMQLIEAHRN ATVHELNTEL TQVMNQLEAE KKRRDQLNQM  660
TRVSQAQCWW EAPVDEMQMP QLDQLKSSLV DLKMNVTKQA DRVLIQNTLN PNSQFFVGSS  720
KKSTIYGDED QETSQGRQKI AIAKIPKRNN LQVTFSKRRS GLFKKASELC TLCGVEIAII  780
VFSPANKPFS FGHPEVDSIV DRFAARNPYP NFQAGSTGST QQRVEAHRNA SVHELNMRLT  840
QVVKQLEAEK NCGQALDKIS KASEKQCWWE RLVDELGFHE LQILKASMED LKKNVTKQAN  900
WILMESSAPA DAANCSSSSP FFHKEQWCCS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-69	M-type_MADS family protein