PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010375.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 582aa MW: 60754.1 Da PI: 7.1902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010375.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.9	5.1e-40	175	310	3	114
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai++ tgt++++a+++ + s +ss+s+ s++ PCP010375.1 175 VAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEHAIIATTGTGTIPANFStLNISLRSSGSTLSAPpskssphsfpg 272 689*****************************************************************999877888888885555566666788888 PP TCP 89 ......................kaaksaakskksqksaasalnlakes 114 + +q++++++++ +++ PCP010375.1 273 alalahhphydegfahsgllgfH----------QQHQQQQHQQHHHQP 310 88888888888766544443331..........222222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MVWVGDELSW KCIRCFYLML TCAVSLLPAL PSTGTNWTHP PTPTPSDICN LPFAPEGGGG 60 GGGGPPFVGS ISIQAGLTTT SHSTPPPPPT SVPSSSSFSS SSSTSSPSST STSTAPPPHL 120 VDASLAIATR SDPHPPTRPA SLLDSAKNNQ TQQQLTISPA TSTAPSAPAA PATQVAKRST 180 KDRHTKVEGR GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEHA IIATTGTGTI 240 PANFSTLNIS LRSSGSTLSA PPSKSSPHSF PGALALAHHP HYDEGFAHSG LLGFHQQHQQ 300 QQHQQHHHQP HQSPLITADQ IAEALPSGGG DSAGGGGGES TENYMRKRFR EDLFKDDNQG 360 QGESGSGDGG SPSRNKAFKG ASSGGLQLPK QQEQGAEVGS SGVLRPSNIL PATAMWAVAP 420 APTSGAGNTF WMLPVTAGPG VPSMATATFG AGPSEAAQMW TFPSSTASHG STLQAPMHFM 480 PRFNLPGSLE FQPATAGGRG NPLQLGSMLM QQPPSQHLGL GVSESNLGML AALNAYSRGG 540 LNMNSDQHQQ NHHHPLDHHH HQQQQHQPQT TDSGDEAPNS SQ

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MVWVGDELSW KCIRCFYLML TCAVSLLPAL PSTGTNWTHP PTPTPSDICN LPFAPEGGGG  60
GGGGPPFVGS ISIQAGLTTT SHSTPPPPPT SVPSSSSFSS SSSTSSPSST STSTAPPPHL  120
VDASLAIATR SDPHPPTRPA SLLDSAKNNQ TQQQLTISPA TSTAPSAPAA PATQVAKRST  180
KDRHTKVEGR GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEHA IIATTGTGTI  240
PANFSTLNIS LRSSGSTLSA PPSKSSPHSF PGALALAHHP HYDEGFAHSG LLGFHQQHQQ  300
QQHQQHHHQP HQSPLITADQ IAEALPSGGG DSAGGGGGES TENYMRKRFR EDLFKDDNQG  360
QGESGSGDGG SPSRNKAFKG ASSGGLQLPK QQEQGAEVGS SGVLRPSNIL PATAMWAVAP  420
APTSGAGNTF WMLPVTAGPG VPSMATATFG AGPSEAAQMW TFPSSTASHG STLQAPMHFM  480
PRFNLPGSLE FQPATAGGRG NPLQLGSMLM QQPPSQHLGL GVSESNLGML AALNAYSRGG  540
LNMNSDQHQQ NHHHPLDHHH HQQQQHQPQT TDSGDEAPNS SQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-70	TCP family protein