PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010247.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 460aa    MW: 52312.2 Da    PI: 6.6757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010247.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92e-114594591373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaal.............. 81 
                  l++lL++cAe +s+ d+  a++l++ ls ++sp gd+++Rl+++f++AL  rl+     ++++   l++ +++ + s+++                  
  PCP010247.1  59 LRHLLITCAELISHLDFPSAHRLISLLSSNSSPFGDSTERLTHHFVKALCFRLNInpnYSPTTIGPLTALTNAASASASS---Ssnylflpvlqeeed 153
                  68**************************************************9862122333333333333332223333...135589999999999 PP

         GRAS  82 ..........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetge 163
                             ++++++P+++fshltaNqaIlea++ +   +Hi+Dfdi++G+QWp+L+qaL +R+     ++pp+lRiT+ g+    + + l +tge
  PCP010247.1 154 nneealhscyLTLNQITPFIRFSHLTANQAILEAIDAShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGE 247
                  999999886556************************996789************************87777779**********....9********* PP

         GRAS 164 rLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                  rL +fA++lg+ f+f++l    +++  + +++++L ++++E+laVn+vl lh+l+ ++ +       +L+ +ksl+Pkv++++++ea+hns+ F++rf
  PCP010247.1 248 RLLRFAQSLGLAFQFHPLvlnnTSRPSDLISPSTLGLHQNEVLAVNCVLYLHTLVTDDSCDLF---LFLQKIKSLNPKVFTIANKEANHNSHLFFNRF 342
                  ******************555444456788************************966666555...9******************************* PP

         GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                  +eal++y a+fdslea+lp++s+er +vE+  +grei++vv  eg++r++rhe++e+ W+  l++aGF++vpls +a +qaklllr ++ s+gy++  
  PCP010247.1 343 VEALDHYGAVFDSLEATLPPNSRERLVVEEW-FGREIKDVVGIEGEKRKQRHESYETfWEVVLRRAGFENVPLSPFALSQAKLLLRLHYpSEGYQLRI 439
                  *****************************97.**********************9977**************************************** PP

         GRAS 354 esgslvlgWkdrpLvsvSaW 373
                   ++s++lgW++rpL+svS+W
  PCP010247.1 440 FNDSFFLGWQNRPLFSVSSW 459
                  ******************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MGSFNSCHIQ QQQQEDHLNP NNNNISDLQL YHHHLHHHHI SDQPTLIMST SPSISPTHLR  60
HLLITCAELI SHLDFPSAHR LISLLSSNSS PFGDSTERLT HHFVKALCFR LNINPNYSPT  120
TIGPLTALTN AASASASSSS NYLFLPVLQE EEDNNEEALH SCYLTLNQIT PFIRFSHLTA  180
NQAILEAIDA SHLSIHILDF DIMHGVQWPP LMQALVERSY NSPLHPPPTL RITATGRDLT  240
LLLRTGERLL RFAQSLGLAF QFHPLVLNNT SRPSDLISPS TLGLHQNEVL AVNCVLYLHT  300
LVTDDSCDLF LFLQKIKSLN PKVFTIANKE ANHNSHLFFN RFVEALDHYG AVFDSLEATL  360
PPNSRERLVV EEWFGREIKD VVGIEGEKRK QRHESYETFW EVVLRRAGFE NVPLSPFALS  420
QAKLLLRLHY PSEGYQLRIF NDSFFLGWQN RPLFSVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-120GRAS family protein