PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010164.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 869aa MW: 95908.3 Da PI: 8.429

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010164.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.6e-13	529	575	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT Ed +l ++vkq+G + W+ Ia+t+ gR +kqc++ w+++l PCP010164.1 529 KGQWTDGEDRKLMRLVKQYGVRKWAQIAETLE-GRVGKQCRETWHNHL 575 799***************************.***********96 PP
2	Myb_DNA-binding	53.6	5.1e-17	581	623	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +lvda++ G++ W+ Ia++++ gRt++ +k++w+ PCP010164.1 581 KDSWTEEEEAILVDAHTGVGNR-WAEIAKRIP-GRTENAIKNHWN 623 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence
MSSDFKLDQV KVHDSEDPEV GSINGGLHSI LPERRAVTLT DRLFRGSRGG HGEIVSVPNG 60 GDEKRERGDE KREHGSARKS GPLLSGTAYC ISSCSMILLN KVVLSGYNFN AGVSLMFYQN 120 LISTVIVVLL GFSGVATVEK LNWKLVRVWI PVNVIFIGML VSGMYSLKYV NIAMVTILKN 180 VTNILTALGE LYLFRKHQNQ KVWTAMFFMI ISAISSGITD ISFDTVGYAW QLSNCVLTAS 240 YSLTLRRVMD EAKKYTRSGS LNEVSMVLLN NLLSLPFAAL LIILFDEWEY VLNVDVIKLP 300 MFWVVATASG FLGLAISFTS MWFLHQTGPT TYSLVGSLNK IPISLAGLVL FKVPLSLPNL 360 FSILFVSLFM EGGRGGGGGG GDLGVYGFRN NTQHHSIYKT GPPLTAIDRF LWGSHQSQNN 420 ASNKDHQKVV SSNGLSGFAS FGGGGAIVGH EAAASWPSNY SATTNHLQEP SFVDEFFVGQ 480 GEALMMSWFQ GQNPNTTDGF REEGRVSERN CKAVGKRAKK GLTAATIIKG QWTDGEDRKL 540 MRLVKQYGVR KWAQIAETLE GRVGKQCRET WHNHLRPDIK KDSWTEEEEA ILVDAHTGVG 600 NRWAEIAKRI PGRTENAIKN HWNATKRRQN SRRKNKQTEG KNGNNKKPQS SILQNYITSK 660 NLIINNNSNI SSSTPTSSST LSHEDPSKTY LNILVTEPSD QSTTSNCCDS PLNLADSLYN 720 DDELVFMQNF FTNNPHNHPQ QPSNSTENNV GLIVSPMEAS QNPNIYNFSS SIINPTTTTT 780 TTSTPSPATP TPLYSDMYLS YLLNGAANSS SYNPNDHHPH LGFYNTNMEY LVSHDHHHHL 840 QAAASASNER REMDLIEMGS ASQGTRSLT

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence

MSSDFKLDQV KVHDSEDPEV GSINGGLHSI LPERRAVTLT DRLFRGSRGG HGEIVSVPNG  60
GDEKRERGDE KREHGSARKS GPLLSGTAYC ISSCSMILLN KVVLSGYNFN AGVSLMFYQN  120
LISTVIVVLL GFSGVATVEK LNWKLVRVWI PVNVIFIGML VSGMYSLKYV NIAMVTILKN  180
VTNILTALGE LYLFRKHQNQ KVWTAMFFMI ISAISSGITD ISFDTVGYAW QLSNCVLTAS  240
YSLTLRRVMD EAKKYTRSGS LNEVSMVLLN NLLSLPFAAL LIILFDEWEY VLNVDVIKLP  300
MFWVVATASG FLGLAISFTS MWFLHQTGPT TYSLVGSLNK IPISLAGLVL FKVPLSLPNL  360
FSILFVSLFM EGGRGGGGGG GDLGVYGFRN NTQHHSIYKT GPPLTAIDRF LWGSHQSQNN  420
ASNKDHQKVV SSNGLSGFAS FGGGGAIVGH EAAASWPSNY SATTNHLQEP SFVDEFFVGQ  480
GEALMMSWFQ GQNPNTTDGF REEGRVSERN CKAVGKRAKK GLTAATIIKG QWTDGEDRKL  540
MRLVKQYGVR KWAQIAETLE GRVGKQCRET WHNHLRPDIK KDSWTEEEEA ILVDAHTGVG  600
NRWAEIAKRI PGRTENAIKN HWNATKRRQN SRRKNKQTEG KNGNNKKPQS SILQNYITSK  660
NLIINNNSNI SSSTPTSSST LSHEDPSKTY LNILVTEPSD QSTTSNCCDS PLNLADSLYN  720
DDELVFMQNF FTNNPHNHPQ QPSNSTENNV GLIVSPMEAS QNPNIYNFSS SIINPTTTTT  780
TTSTPSPATP TPLYSDMYLS YLLNGAANSS SYNPNDHHPH LGFYNTNMEY LVSHDHHHHL  840
QAAASASNER REMDLIEMGS ASQGTRSLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	380	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	1e-56	MYB family protein