PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010163.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 375aa MW: 41651.7 Da PI: 8.2353

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010163.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F+ +++L +H+ H PCP010163.1 134 FPCTACGEIFPKPETLDHHQAIH 156 89******************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MANISTLFNK FLSLIILLLH LGCFSSTATA NIPKKPHHRR KLSTHLSKPS TLKPQKALST 60 SWSYLKRIFT SKSYKITCTN IIQSHLSTPP RSSHHSIVSL VLPDSDPKYL PGSLPESDIS 120 ADSHQCFPLR NDIFPCTACG EIFPKPETLD HHQAIHHAVS ELHDGDSGKN IVRIIFKTGW 180 TDTRKAPEIH RILKIHNSGK ILARFEEYRE LVKSKAARNG TVRRRDERCI ADGNELLRFH 240 CSTFVCDLGL NGNSGICNHE HCSVCGIIKS GFSPKLDGIS TLSSSSRAHV AIPEDIEEEF 300 QFMNVKRAML VCRVVAGRVG CDTMEDIDDV DKEGGGFDSV VGRGGSGVHT RVDEEELLVF 360 NPRAVLPCFV IIYTM

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MANISTLFNK FLSLIILLLH LGCFSSTATA NIPKKPHHRR KLSTHLSKPS TLKPQKALST  60
SWSYLKRIFT SKSYKITCTN IIQSHLSTPP RSSHHSIVSL VLPDSDPKYL PGSLPESDIS  120
ADSHQCFPLR NDIFPCTACG EIFPKPETLD HHQAIHHAVS ELHDGDSGKN IVRIIFKTGW  180
TDTRKAPEIH RILKIHNSGK ILARFEEYRE LVKSKAARNG TVRRRDERCI ADGNELLRFH  240
CSTFVCDLGL NGNSGICNHE HCSVCGIIKS GFSPKLDGIS TLSSSSRAHV AIPEDIEEEF  300
QFMNVKRAML VCRVVAGRVG CDTMEDIDDV DKEGGGFDSV VGRGGSGVHT RVDEEELLVF  360
NPRAVLPCFV IIYTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-109	C2H2 family protein