PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010074.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 485aa    MW: 53715.6 Da    PI: 4.9639
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010074.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3611.8e-1101164852374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++LlecA+ ++++d   a + L rl+e +s +gdp++R+a+yf+eAL++r++     l +  + +++ ++  ++ + ++k++++++P+ kf+hltaN
  PCP010074.1 116 LKALLECAR-LAESDPDGAVKSLVRLRESVSDHGDPTERVAFYFAEALQNRVSF----LQSEKSFTTAYDTPCEDFTLSYKALNDACPYSKFAHLTAN 208
                  689******.5666999***********************************98....333333334433449999********************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p s+Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ +  
  PCP010074.1 209 QAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPvSIRISGIPAPSLGdsPAASLIATGNRLREFAKLLELNFEFEP-ILTPVHQLDESCV 305
                  *************************************77777**********999889999***********************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+p+EalaVnlvlql++llde+ +  +   + Lkl ksl+P+vv++ e ea++n+  F+ rf +al+yy+alf+sle ++ r+s er kvEr llgr
  PCP010074.1 306 RVDPEEALAVNLVLQLYNLLDEKPTAVQ---SALKLAKSLNPQVVTLGEYEANLNRVGFASRFKNALKYYAALFESLEPNMIRDSPERLKVERLLLGR 400
                  ********************99999988...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i ++v  e+   +rer e +e+W+  +e +GF+pv+ls++ ++qak ll +++ s  y++ e+   ++ l W++ pL++vS+Wr
  PCP010074.1 401 RIGSLVGPEQPGtKRERFEDKEQWKYLMECSGFEPVALSHYSVSQAKILLWNYNySSLYSLRESPPGFLsLSWNEVPLFTVSSWR 485
                  ********998769****************************************9999****99877777**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MDSIIGGGDS TDSSNLPSAC DTWQGSNSDF GLYGADPFRP HCPSRLSNPC SPPSDLNRVI  60
FSETQNQLPA WTSPLPQQLH QVSVKESKSN DPQSLQNDAV GVSLRSPEIE SEPPLLKALL  120
ECARLAESDP DGAVKSLVRL RESVSDHGDP TERVAFYFAE ALQNRVSFLQ SEKSFTTAYD  180
TPCEDFTLSY KALNDACPYS KFAHLTANQA ILEATERATK IHIVDFGIVQ GVQWAALLQA  240
LATRSTGKPV SIRISGIPAP SLGDSPAASL IATGNRLREF AKLLELNFEF EPILTPVHQL  300
DESCVRVDPE EALAVNLVLQ LYNLLDEKPT AVQSALKLAK SLNPQVVTLG EYEANLNRVG  360
FASRFKNALK YYAALFESLE PNMIRDSPER LKVERLLLGR RIGSLVGPEQ PGTKRERFED  420
KEQWKYLMEC SGFEPVALSH YSVSQAKILL WNYNYSSLYS LRESPPGFLS LSWNEVPLFT  480
VSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein