PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010065.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 302aa    MW: 34287.2 Da    PI: 6.0422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010065.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61e-22127187259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg +WrKYGqK + ++++pr+Y+rCt +   gC+++k+v++ +++p   ++tY geH+++
  PCP010065.1 127 EDGQAWRKYGQKIILNAPYPRAYFRCTRKfdqGCKATKQVQQIQDNPLSYHTTYIGEHTCR 187
                  89*************************99999***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGTNHKRLIE ELHEGQKTAA ELQILLQNQY GDRVLAEELL MKIMTVFADS LSALTASDGH  60
NDHQSAASGE VYQVKPEPSQ VEHSHCCDRS SEDSGESRKT QAFKDRRGCY KRRKTCQSWT  120
VTSPKIEDGQ AWRKYGQKII LNAPYPRAYF RCTRKFDQGC KATKQVQQIQ DNPLSYHTTY  180
IGEHTCRAMI KPSPMIIGSN PWESQTVSSE SGTPHHQNPS FFGTSAPSIP IAKQEDYKVG  240
TPSDLTDNSM WHDLKDHLDL SEPVGICVSS NEDVVSNMHW EEDMDYVKCI NFEDVFNFES  300
FQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111138KRRKTCQSWTVTSPKIEDGQAWRKYGQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-39WRKY family protein