PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010064.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 347aa MW: 38068.5 Da PI: 6.9583

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010064.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.4	3.4e-29	167	227	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ +s+fprsYYrCt++ +Cp+kk+v+r ++dp ++e++Y+geH+++ PCP010064.1 167 EDGFTWRKYGQKEIMNSRFPRSYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGEHTCH 227 7**************************999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEEIISLILH GCMLAGKLKE TLPNLATQPD LLSNSLEEIT KIFGSAKERV LHSQGSSSTS 60 YLHNLLTLEH QQIGTSVEQW LRSNTQAMDI IQTQLAADRN EAKVSGGVDV RVSEAAIGGF 120 QAADVSASNV NIASSSTQRP RRRKDQGVIN KITVPAPRIG NTEIPPEDGF TWRKYGQKEI 180 MNSRFPRSYY RCTHQKLYNC PAKKQVQRLD NDPLTFEVMY RGEHTCHMSA TAPSTVPPPT 240 ADHHIPQDHM SATTEPPTSL WLSMDFNPIR QGGSSSGMIG GGRGSGRGSG DGVGTSTGTR 300 YGKEVDFPVM DLADTMFNSG SSSSSMDFIF NSAEHRWQSD DKKNLDH

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEEIISLILH GCMLAGKLKE TLPNLATQPD LLSNSLEEIT KIFGSAKERV LHSQGSSSTS  60
YLHNLLTLEH QQIGTSVEQW LRSNTQAMDI IQTQLAADRN EAKVSGGVDV RVSEAAIGGF  120
QAADVSASNV NIASSSTQRP RRRKDQGVIN KITVPAPRIG NTEIPPEDGF TWRKYGQKEI  180
MNSRFPRSYY RCTHQKLYNC PAKKQVQRLD NDPLTFEVMY RGEHTCHMSA TAPSTVPPPT  240
ADHHIPQDHM SATTEPPTSL WLSMDFNPIR QGGSSSGMIG GGRGSGRGSG DGVGTSTGTR  300
YGKEVDFPVM DLADTMFNSG SSSSSMDFIF NSAEHRWQSD DKKNLDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	144	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-55	WRKY family protein