PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009067.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 427aa MW: 47293 Da PI: 9.1688

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009067.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	12	34	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP009067.1 12 FVCEICNKGFQRDQNLQLHRRGH 34 89*******************88 PP
2	zf-C2H2	12.2	0.00055	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ PCP009067.1 89 WKCEKCSKKYAVQSDWKAHSKVC 111 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MSPKSLMATN LFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKTEVIR KKVYVCPEKS 60 CVHHEPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKV CGTREYRCDC 120 GTLFSRKDSF ITHRAFCDAL AAEQSARFCS APTTSNINPS FMNGSIANNT HKPQRIPHFI 180 PMFQPEFAGS DHLAANNHLS SNAFIPEMLQ TASMDMFGSS SSSQMQWLIN NNKFVEESSF 240 ANANNLSMSS PSLLRGVLKE DEESKGSFSE TISTTTSTSF YNNNNNKQNH HHHHQPMSAT 300 ALLQKAARMG STTSNNNNNP ATTFNDTTLD FNDLVNSMSS SSTQGATIED GSLFLSNKHL 360 MMPAGAAAMT KQGTSEQSSL TRDFLGVGGG DAIFGGGVPF FQQELAKLAS MNDLSQYTST 420 TTSSRHQ

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MSPKSLMATN LFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKTEVIR KKVYVCPEKS  60
CVHHEPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKV CGTREYRCDC  120
GTLFSRKDSF ITHRAFCDAL AAEQSARFCS APTTSNINPS FMNGSIANNT HKPQRIPHFI  180
PMFQPEFAGS DHLAANNHLS SNAFIPEMLQ TASMDMFGSS SSSQMQWLIN NNKFVEESSF  240
ANANNLSMSS PSLLRGVLKE DEESKGSFSE TISTTTSTSF YNNNNNKQNH HHHHQPMSAT  300
ALLQKAARMG STTSNNNNNP ATTFNDTTLD FNDLVNSMSS SSTQGATIED GSLFLSNKHL  360
MMPAGAAAMT KQGTSEQSSL TRDFLGVGGG DAIFGGGVPF FQQELAKLAS MNDLSQYTST  420
TTSSRHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	52	KLKQRSKTEVIRKK
2	41	54	KLKQRSKTEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	3e-87	C2H2 family protein