PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009026.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 313aa MW: 35421.4 Da PI: 8.717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ PCP009026.1 155 FACSICSKTFNRYNNMQMHM 174 78*****************9 PP
2	zf-C2H2	11.5	0.00093	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ PCP009026.1 239 FMCRKCAKTFAVKGDWRTHEKNC 261 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MGLLNHHVED QNLCFQAPPF IEWLKPPSSF SSSSSSSSSS FCISENSTMQ CLPLLSRFTD 60 TKPVKIEDAG MQKEGYGVKE EQMEKVTVAL HIGLPNSTST TAGVYSDTYD QNKKVLNLKE 120 EQVVMKKSFH GCSFNAESRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM QMHMWGHGSE 180 YRKGPDSLKG TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFM 240 CRKCAKTFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSLEGFH 300 EDEKECVTGS EEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-125	C2H2 family protein