PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008997.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 546aa MW: 60129.5 Da PI: 7.7562

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008997.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.4	1.2e-54	48	152	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi PCP008997.1 48 QLQMFWTFQrqeIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 145 89**9887789********************************************************************************* PP NF-YC 96 vprdelk 102 vprde+k PCP008997.1 146 VPRDEIK 152 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MDPNPNTATA AAAPTQQQPQ AQSSPYPATQ SSVPAPPFHH LLQQQQQQLQ MFWTFQRQEI 60 ESVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI RSWLHAEENK 120 RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKEEAVGLGG MVGATASGMP YFYPPMGQPA 180 GGAGGMMIGR PAVDPTGVYG VQPPSQAWQS VWQTAADDGS YGSGGSSGQG NLDGQREFSS 240 LGSSVKVTLL VDFSPQEQEN QPHRPKQSRG SKAMNFSKTK LIPFLVLILS IISVLRLVRI 300 AVTTSSSPPP PPALGNTCSF PFICTKFPAE TNASANTSSL RKKEYQLLSN LISQKAPCNL 360 LIFGLEPQYV SLSSINAGGT TVFLEDDQNK ISTLKPNSNT TRVYKVDYQI PAKEAYKLLQ 420 HARENPDCAP SSKLLQQSKC QLALKNLPQE VYKLEWDVVV VDGPSGNTPE EPGRMSSIYS 480 ASMIARKANI THVVVHDVDR MIEKWFSWEF LCDENLVSSK GRLWNFRITG QLNSTNFCPA 540 KGITIE

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MDPNPNTATA AAAPTQQQPQ AQSSPYPATQ SSVPAPPFHH LLQQQQQQLQ MFWTFQRQEI  60
ESVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI RSWLHAEENK  120
RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKEEAVGLGG MVGATASGMP YFYPPMGQPA  180
GGAGGMMIGR PAVDPTGVYG VQPPSQAWQS VWQTAADDGS YGSGGSSGQG NLDGQREFSS  240
LGSSVKVTLL VDFSPQEQEN QPHRPKQSRG SKAMNFSKTK LIPFLVLILS IISVLRLVRI  300
AVTTSSSPPP PPALGNTCSF PFICTKFPAE TNASANTSSL RKKEYQLLSN LISQKAPCNL  360
LIFGLEPQYV SLSSINAGGT TVFLEDDQNK ISTLKPNSNT TRVYKVDYQI PAKEAYKLLQ  420
HARENPDCAP SSKLLQQSKC QLALKNLPQE VYKLEWDVVV VDGPSGNTPE EPGRMSSIYS  480
ASMIARKANI THVVVHDVDR MIEKWFSWEF LCDENLVSSK GRLWNFRITG QLNSTNFCPA  540
KGITIE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-87	NF-YC family protein