PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008961.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 882aa MW: 98728 Da PI: 7.9632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008961.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	422	444	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP008961.1 422 FVCEICNKGFQRDQNLQLHRRGH 444 89******************988 PP
2	zf-C2H2	11.8	0.00072	498	520	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ PCP008961.1 498 WKCEKCSKKYAVQSDWKAHSKTC 520 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MSWNWKENLE NSVAVTYIQN QPENVIGVSS HRLSKVEDSV SSSSIIPSTK EQERVTHEYE 60 KIAQPYDHTL LKWRNIGDIL AQCNLYIVEP EKYEEVAQDK SWIKAMEEEL SMIEKNETWE 120 LVDRPIDKQV IGVKWVFKTK LNLDGSVQKN KARLVAKGYV QKPEIDYNET FAPEEVYVDQ 180 PEGFVINGKE DNVYRLHKAL YGLKQAPRAW YLEIDIYFAQ CGFEKSLSEA TLYTKTRGKK 240 DILIVSIYVD DIVYTRSNEE KLDEFKEDMK VKYEMTDLGL LHHFLGMRVI QTDSSIFIHQ 300 RKCASSLLNK FGLSECKYVS IPLVATEKLS KDDGSGTANE EQYRKIVGSL LYLTATRPDV 360 IKNTLGYAFS FGSEVFSWAS VKQNCVALST AKVMQKFSQD PTDPDAEVLA LSPTTLMAKN 420 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRLNKEVKK KVYICPEKTC VHHDPSRALG 480 DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRKDSFI 540 THRAFCDALT EESARLATSS VAGAPTHLNF GNDAMLNNPM MNNSQAVVQD VSQISMQYEQ 600 GLMRQDFNGL DQLHQHEKSR LSLWLNQQAN SNSNQINLMD DVQANPNHPL YLSSSSSNTF 660 PEMVQMPSSS NNVNLFGSSD SMSTFGASTS GANLSLSPVQ ESGTKKLIGN NSNLVGSSVS 720 KPPAAPMSAT ALLQKAAQLG STRSSNNQGS SLGVNVMSSS SFSNTLMGFS NLNQDRSNEL 780 HQFVQNAHQS RGGSANLSSL TSSSSHTSST TLEQLMNTIQ RGSNNIGTID RQNSPTRDFL 840 GMGGGGGGGD HADQFSHNNR QMFFPQDLAK FASSMSQFTS NH

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MSWNWKENLE NSVAVTYIQN QPENVIGVSS HRLSKVEDSV SSSSIIPSTK EQERVTHEYE  60
KIAQPYDHTL LKWRNIGDIL AQCNLYIVEP EKYEEVAQDK SWIKAMEEEL SMIEKNETWE  120
LVDRPIDKQV IGVKWVFKTK LNLDGSVQKN KARLVAKGYV QKPEIDYNET FAPEEVYVDQ  180
PEGFVINGKE DNVYRLHKAL YGLKQAPRAW YLEIDIYFAQ CGFEKSLSEA TLYTKTRGKK  240
DILIVSIYVD DIVYTRSNEE KLDEFKEDMK VKYEMTDLGL LHHFLGMRVI QTDSSIFIHQ  300
RKCASSLLNK FGLSECKYVS IPLVATEKLS KDDGSGTANE EQYRKIVGSL LYLTATRPDV  360
IKNTLGYAFS FGSEVFSWAS VKQNCVALST AKVMQKFSQD PTDPDAEVLA LSPTTLMAKN  420
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRLNKEVKK KVYICPEKTC VHHDPSRALG  480
DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRKDSFI  540
THRAFCDALT EESARLATSS VAGAPTHLNF GNDAMLNNPM MNNSQAVVQD VSQISMQYEQ  600
GLMRQDFNGL DQLHQHEKSR LSLWLNQQAN SNSNQINLMD DVQANPNHPL YLSSSSSNTF  660
PEMVQMPSSS NNVNLFGSSD SMSTFGASTS GANLSLSPVQ ESGTKKLIGN NSNLVGSSVS  720
KPPAAPMSAT ALLQKAAQLG STRSSNNQGS SLGVNVMSSS SFSNTLMGFS NLNQDRSNEL  780
HQFVQNAHQS RGGSANLSSL TSSSSHTSST TLEQLMNTIQ RGSNNIGTID RQNSPTRDFL  840
GMGGGGGGGD HADQFSHNNR QMFFPQDLAK FASSMSQFTS NH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	6e-92	C2H2 family protein