PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008948.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 542aa    MW: 60781.8 Da    PI: 6.3416
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008948.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.4e-1291735422374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++Ll cA+a+s++dl  a++ ++ l +++s +g+pmqRl ay++e+L+a+l rs+s +ykal+++  +   ss+ +++++++++++P+ kf+++ aN
  PCP008948.1 173 KDVLLYCAHAISEDDLYTATSWMEVLGQMVSVSGEPMQRLGAYMLEGLRAKLERSGSLIYKALKCEVPT---SSQLMSYMSVLYDICPYWKFAYVSAN 267
                  789*****************************************************************9...999999******************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                    I ea+e+e  +HiiDf+i qG QW++L+q La Rp+gpp +RiTgv++ +s   +   l+ +gerL+k+A++++vpfefn+ +a+  +++el++Lr
  PCP008948.1 268 VVIREALENEPIIHIIDFQIAQGSQWVPLIQDLARRPGGPPCIRITGVDDTQSAhaRGGGLHIVGERLSKLAASCNVPFEFNA-AARCGSQVELHNLR 364
                  **************************************************9988889999***********************.9************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEa+aVn+ + lh+++desvs+e++rd++L+lvkslsPkv+++veqe+++n+++F+ rf+e ++yy+a+f+s+++  pr++++ri+ E+++++r+
  PCP008948.1 365 IQPGEAIAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVMTLVEQESNTNTSPFFSRFSEMVDYYTAMFESIDVARPRDDKQRINAEAHCVARD 462
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vacegaer+erhe ++kWr+rl++ GF+++pls k+++ ++ ll++++++ +r++e +g+l+lgWk+r++v+ SaWr
  PCP008948.1 463 IVNMVACEGAERVERHELFGKWRSRLMMDGFTQYPLSPKVTAAIRILLKEFHEN-FRIQEADGALYLGWKQRAMVTSSAWR 542
                  ****************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MKTSQQHRGV ASIHHKLYHP PVQQIDAYGY QILENSVFPD TGSQGNNVSF QTCKDDEEQF  60
FTLESYPATA FVTCDSPSAV SSLSNKSPFS PQGSHSCLSD QHHSSGNNYG SPTSGCSVVE  120
DDNEFKYRLR EVEVSLLGPD SDIVDSHFCC HKSGMARWSQ SQIATMIPKL NLKDVLLYCA  180
HAISEDDLYT ATSWMEVLGQ MVSVSGEPMQ RLGAYMLEGL RAKLERSGSL IYKALKCEVP  240
TSSQLMSYMS VLYDICPYWK FAYVSANVVI REALENEPII HIIDFQIAQG SQWVPLIQDL  300
ARRPGGPPCI RITGVDDTQS AHARGGGLHI VGERLSKLAA SCNVPFEFNA AARCGSQVEL  360
HNLRIQPGEA IAVNFPYVLH HMPDESVSTE NHRDRLLRLV KSLSPKVMTL VEQESNTNTS  420
PFFSRFSEMV DYYTAMFESI DVARPRDDKQ RINAEAHCVA RDIVNMVACE GAERVERHEL  480
FGKWRSRLMM DGFTQYPLSP KVTAAIRILL KEFHENFRIQ EADGALYLGW KQRAMVTSSA  540
WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein