PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008681.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 268aa MW: 29730.7 Da PI: 5.7888

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008681.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.8	1.9e-54	80	184	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql+ fw++q ieka+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi PCP008681.1 80 QLQEFWSDQmqdIEKASDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 177 89***9977889******************************************************************************** PP NF-YC 96 vprdelk 102 +prdelk PCP008681.1 178 IPRDELK 184 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MDHSEQTLQQ QQQPVDGAVA SSGQMASYAP SSCQTAPIVA SGTLAVAVTS PSQAPTTFPD 60 PSHQLVYQKI QHLHHHQQVQ LQEFWSDQMQ DIEKASDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVVFA KACEIFILEL TLRSWIHTEE NKRRTLQKND IAAAISRTDV FDFLVDIIPR 180 DELKEEGLGV TKATLPVVGS PADVPYYYVP PQHPVGAPGM IMGKPVDQPA LYAAQQPRPP 240 VAFMPLVQSR PQQPQQQQQE AQQQQADT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	7e-76	NF-YC family protein