PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008657.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 633aa MW: 72261.1 Da PI: 4.8629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008657.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	303	323	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ PCP008657.1 303 YCVVCGKKFKSEKQWKNHEQS 323 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MAASERRCHY EVLGLPRDCS ADEIRSAYRK LALQRHPDKL VQSGLSQSEA TAQFQELAHA 60 YEVLSDPKER AWYDSHRSQI LFSDRGSAAS GSGSGIPNLF PFFSTTVFSG YSDSGRGFYK 120 VYSDVFDKIY ANELNFARKL GLGLDTVREA PAMGNLESPY VQVTAFYNYW AGFCTVMDFC 180 WEDMYDVLAG PNRKSRRLME EENKKVRKKA KREFNETVRG LADFVKKRDK RVMDMMLKKE 240 EERVRKSEEE RERKKKLEKE KLERAMAYEE PEWAKVEEEE EGGNEVEELE EDEEEERRRK 300 ELYCVVCGKK FKSEKQWKNH EQSKKHRDKI AEFRESVGDE ELEVDDEDVL EGEGEERGEL 360 DDVDELGQEI RVGLKIGEEE DGVGGSDLED ELRKFGGENG SEKVEEAVGL DGEEDEDEMG 420 VLKAMVTGRK SKKKVSFRVE PEDILVNDIR VENDDDDAEF MEYNNRKSAR RKGGARKERS 480 KKNGGEANNV DKSENNGGQN EESNEQDNST MKESTYHSVV ENESIDKGDE LLAQKKKSSS 540 KAVNKKEKVK KEANDKSKNS SKGKKAKGAS KNTGNVCDTC GEEFESSKQL FGFPSNIVNF 600 RYSGWLDAVR KGAQRMFSPV ENDLVVKLSK PLY

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MAASERRCHY EVLGLPRDCS ADEIRSAYRK LALQRHPDKL VQSGLSQSEA TAQFQELAHA  60
YEVLSDPKER AWYDSHRSQI LFSDRGSAAS GSGSGIPNLF PFFSTTVFSG YSDSGRGFYK  120
VYSDVFDKIY ANELNFARKL GLGLDTVREA PAMGNLESPY VQVTAFYNYW AGFCTVMDFC  180
WEDMYDVLAG PNRKSRRLME EENKKVRKKA KREFNETVRG LADFVKKRDK RVMDMMLKKE  240
EERVRKSEEE RERKKKLEKE KLERAMAYEE PEWAKVEEEE EGGNEVEELE EDEEEERRRK  300
ELYCVVCGKK FKSEKQWKNH EQSKKHRDKI AEFRESVGDE ELEVDDEDVL EGEGEERGEL  360
DDVDELGQEI RVGLKIGEEE DGVGGSDLED ELRKFGGENG SEKVEEAVGL DGEEDEDEMG  420
VLKAMVTGRK SKKKVSFRVE PEDILVNDIR VENDDDDAEF MEYNNRKSAR RKGGARKERS  480
KKNGGEANNV DKSENNGGQN EESNEQDNST MKESTYHSVV ENESIDKGDE LLAQKKKSSS  540
KAVNKKEKVK KEANDKSKNS SKGKKAKGAS KNTGNVCDTC GEEFESSKQL FGFPSNIVNF  600
RYSGWLDAVR KGAQRMFSPV ENDLVVKLSK PLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	230	RKSRRLMEEENKKVRKKAKREFNETVRGLADFVKKRDK
2	204	212	KKVRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-143	C2H2 family protein