PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008636.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 289aa    MW: 32906.3 Da    PI: 7.6921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008636.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-06120139120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C k+F+r  nL+ H+
  PCP008636.1 120 FSCHVCFKTFNRYNNLQMHM 139
                  89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MESFEISSSS SPLFYSNHNL ETLNLFPSEI PNANLEPLPP ISCLLRSPDQ VPNSHVDNPK  60
AICYEDQKED GVTVALHIGL PDYSDGSMSY LTDRKDDEDN VIAQYWIPTP EQILIGFSHF  120
SCHVCFKTFN RYNNLQMHMW GHGSQYRRGP ESLKGTQPRT MFGIPCYCCA EGCKNNIDHP  180
RAKPLKDFRT LQTHYKRKHG MKPFMCRKCG KLLAVKGDWR THEKNCGKRW LCVCGSDFKH  240
KRSLKDHIKA FGSGHSHFPP NSFDELRDLD EDISPTTSLF KGMSSDAAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-113C2H2 family protein