PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008423.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 538aa MW: 60691.6 Da PI: 7.0077

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008423.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	249	295	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd lv++v ++G + W+ Ia + gR +kqc++rw+++l PCP008423.1 249 KGQWSPEEDRHLVQLVGRFGIKKWSQIATQLT-GRVGKQCRERWHNHL 295 799**************************9.***********97 PP
2	Myb_DNA-binding	55.5	1.3e-17	303	343	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd++l++a+k+ G++ W+ Ia++++ gRt++ +k++w+ PCP008423.1 303 MWSEEEDKILIEAHKEIGNR-WSEIAKMLP-GRTENTIKNHWN 343 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MEYLETNLRE LDNFPFLSTL LSDSSNPLKL MKPENPPPST ATKTTTINGN IYSVSRSSPP 60 PPNSPKALFH HPNSTIHGFN WNSHSHEYNL TPKINHFTTT EAGSSSNPFS KISTTCNNLN 120 NPFEPSPYTA NHHHHDFMTS DCRESESVVM HGFHGGVRGF LGYQPHHQEI LHDQQMGAES 180 CVQLPQLVNY GEFGSSSVPA MRLPSDDVSS NSIIAEIEFG RRFSADEKNK RLCARRAIKM 240 LQKKPDIIKG QWSPEEDRHL VQLVGRFGIK KWSQIATQLT GRVGKQCRER WHNHLRPDIR 300 KEMWSEEEDK ILIEAHKEIG NRWSEIAKML PGRTENTIKN HWNATKRKQN SKRKSNKQDS 360 NINNYNESSI LQDYIRSLVG TTATDTTASP NSTGTTENKA GLSSVVSPDH QSGMHIDQNN 420 IVESPDATNS ANWDLMGYRP EPIDSEASNM NNHMGVGVNL SDFDKINMFN VFESYGLGGY 480 LQQGMASSST SRVKDPSCNM AYELPFLPLE TNNFMQGHDN HVKKELDIME MLHFKGNV

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MEYLETNLRE LDNFPFLSTL LSDSSNPLKL MKPENPPPST ATKTTTINGN IYSVSRSSPP  60
PPNSPKALFH HPNSTIHGFN WNSHSHEYNL TPKINHFTTT EAGSSSNPFS KISTTCNNLN  120
NPFEPSPYTA NHHHHDFMTS DCRESESVVM HGFHGGVRGF LGYQPHHQEI LHDQQMGAES  180
CVQLPQLVNY GEFGSSSVPA MRLPSDDVSS NSIIAEIEFG RRFSADEKNK RLCARRAIKM  240
LQKKPDIIKG QWSPEEDRHL VQLVGRFGIK KWSQIATQLT GRVGKQCRER WHNHLRPDIR  300
KEMWSEEEDK ILIEAHKEIG NRWSEIAKML PGRTENTIKN HWNATKRKQN SKRKSNKQDS  360
NINNYNESSI LQDYIRSLVG TTATDTTASP NSTGTTENKA GLSSVVSPDH QSGMHIDQNN  420
IVESPDATNS ANWDLMGYRP EPIDSEASNM NNHMGVGVNL SDFDKINMFN VFESYGLGGY  480
LQQGMASSST SRVKDPSCNM AYELPFLPLE TNNFMQGHDN HVKKELDIME MLHFKGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	1e-56	MYB family protein