PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008202.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 550aa MW: 59450.2 Da PI: 4.9511

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008202.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l PCP008202.1 39 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	53.4	6e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+v++++++G++ W++ a++++ gRt++++k++w++ PCP008202.1 92 KGAFTPEEERLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MSRTTNESED GVLSKDQIDS PLMDESNGGS GNGGMVLKKG PWTSAEDAIL VEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQAFQES QQGQSSGGIN GADREQHDSM 180 QANSFEIPDV VFDSLKGNGC VLPYVPDLPD ISPGGMLMKG LGSAPYCGFM PPTMHRQKRL 240 RESTALFSTS GGSFNQFDQF QNDTCDKVAR TFGLPFPHDP DPTTRSPLSF GVIQGSHSLS 300 NGNSSASKPT SGAVKLELPS LQYPETDLGS WSTSPPPPLL ESIDAFIQSP PQVGTFEPDC 360 TSPRNSGLLD ALLHEAKALS SAKNHSSEKS SNSSSVTPGD LAIGSNLNIC ETEWEERDPI 420 SPLGHSATSL FSECTPISAS GSSLDEPPPA ETFTGCNVKS EPVDQAWAPD KEKEMGLLMD 480 YTRPDAILAS EWFGNGMHES IASLLGDDLA AECKHLASGS PTSDQGGSES WSEKRSFAIE 540 TCGGFAMIVE

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MSRTTNESED GVLSKDQIDS PLMDESNGGS GNGGMVLKKG PWTSAEDAIL VEYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIVELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQAFQES QQGQSSGGIN GADREQHDSM  180
QANSFEIPDV VFDSLKGNGC VLPYVPDLPD ISPGGMLMKG LGSAPYCGFM PPTMHRQKRL  240
RESTALFSTS GGSFNQFDQF QNDTCDKVAR TFGLPFPHDP DPTTRSPLSF GVIQGSHSLS  300
NGNSSASKPT SGAVKLELPS LQYPETDLGS WSTSPPPPLL ESIDAFIQSP PQVGTFEPDC  360
TSPRNSGLLD ALLHEAKALS SAKNHSSEKS SNSSSVTPGD LAIGSNLNIC ETEWEERDPI  420
SPLGHSATSL FSECTPISAS GSSLDEPPPA ETFTGCNVKS EPVDQAWAPD KEKEMGLLMD  480
YTRPDAILAS EWFGNGMHES IASLLGDDLA AECKHLASGS PTSDQGGSES WSEKRSFAIE  540
TCGGFAMIVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	1e-123	MYB family protein