PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008172.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 342aa    MW: 36911.8 Da    PI: 8.2559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008172.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023148170123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++ Fs++  L  H++ H
  PCP008172.1 148 FTCNFCKRDFSTSQALGGHQNAH 170
                  89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MAEEYQSPFE ASNISAASDG TPPPKKDSPS PLPPPDLPDQ KMKMKMKEKV IIDDSDDEQR  60
KPKQPSPAAG SSSSPTQNSR PLLDLKRSNN DPGHASGALP SKELILFNPL NQGSSSNPGG  120
LGLLSQHNEP RDENPRGDDG KKPQSRVFTC NFCKRDFSTS QALGGHQNAH KQERALAKKH  180
QGGIGMDHNF FGHSHPYYSP YSSITQHPLY GSYGRSLGIM MDSMIHKPYP WSSSTSWFGR  240
FGHGVGSGGW SSSRPGDLMN NFQSSIDRLN LDGLHANTTS SETLGLPGSI SGSRYVQEIG  300
SARNFGGSNF GINRPIIGGD VLGREPPKPD TDTSGLDLSL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.17e-15C2H2 family protein