PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007943.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 513aa MW: 53611.1 Da PI: 8.0408

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007943.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.8	6.4e-41	105	226	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ + s +ss+s+ s++ PCP007943.1 105 PVAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNISLRSSGSSLSAPpsksaphsfh 202 5789*****************************************************************99986777777776444444445566666 PP TCP 89 .......................k 89 + PCP007943.1 203 galalahhphydegfahsglmgfH 226 677777777776665544333321 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MGSISIQAGL TATSHSTPPP PTTSAPSSSS FSSSSSTSSP SSTSTSTAPP QLVDASLAMA 60 TRSDPHPPTR PGSLLDSAKN NQIQQQLTIS PATTPPPAAA ATTTPVAKRS TKDRHTKVEG 120 RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP SIIAATGTGT IPANFSTLNI 180 SLRSSGSSLS APPSKSAPHS FHGALALAHH PHYDEGFAHS GLMGFHQQLQ QQQHPQHHHQ 240 PHQSPLMTAD QIAEALPSGG RDSGGGGGGE STENYMRKRF REDLFKDDNQ ERGESGSGGG 300 GGSPSRNKAF KGGSSCGLQL PKQQQQGAEL GSYPSGVLRP SNILPATAMW AVAPAPTSGA 360 GSTFWMLPVT AGSAVPPMAT GTSGAGPSEA AQMWTFPSAT TSHVSTLQAP LHFMPRFNLP 420 GSVEFQQAAA GSRGSPLQLG SMLMQQQPSQ HLGLGLSESN LGMLAALNAY SRGGLNMNSD 480 HQQNHHHPLD HHQQQHHQHQ TTDSGDEGPN SSQ

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MGSISIQAGL TATSHSTPPP PTTSAPSSSS FSSSSSTSSP SSTSTSTAPP QLVDASLAMA  60
TRSDPHPPTR PGSLLDSAKN NQIQQQLTIS PATTPPPAAA ATTTPVAKRS TKDRHTKVEG  120
RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP SIIAATGTGT IPANFSTLNI  180
SLRSSGSSLS APPSKSAPHS FHGALALAHH PHYDEGFAHS GLMGFHQQLQ QQQHPQHHHQ  240
PHQSPLMTAD QIAEALPSGG RDSGGGGGGE STENYMRKRF REDLFKDDNQ ERGESGSGGG  300
GGSPSRNKAF KGGSSCGLQL PKQQQQGAEL GSYPSGVLRP SNILPATAMW AVAPAPTSGA  360
GSTFWMLPVT AGSAVPPMAT GTSGAGPSEA AQMWTFPSAT TSHVSTLQAP LHFMPRFNLP  420
GSVEFQQAAA GSRGSPLQLG SMLMQQQPSQ HLGLGLSESN LGMLAALNAY SRGGLNMNSD  480
HQQNHHHPLD HHQQQHHQHQ TTDSGDEGPN SSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	267	GGRDSGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-68	TCP family protein