PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007777.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 524aa MW: 57353.9 Da PI: 8.9833

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007777.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP007777.1 97 FVCEICKKGFQRDQNLQLHRRGH 119 89*******************88 PP
2	zf-C2H2	15.5	4.8e-05	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PCP007777.1 173 WKCDKCSKKYAVQSDWKAHQKTC 195 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MSIITGSAAT GSFSSGNTGG EEVQQQQQEL LNHHANFHGS NSFLPTTPNI NSNGISTTQV 60 QKQPPPAKKK RNLPGTPDPT AEVIALSPKT LMATNRFVCE ICKKGFQRDQ NLQLHRRGHN 120 LPWKLKQRTS TEIIKRVYIC PESSCVHHDP LRALGDLTGI KKHFFRKHGE KTWKCDKCSK 180 KYAVQSDWKA HQKTCGTREY RCDCGTIFSR RDSFITHRAF CDAIAEENNR NQGVVPMSNN 240 IMGAPNQGQL SNSELVIPAS PPMNNKITDN PSSARSDTTT SDQFHHNFDA KNAPLTLEPQ 300 LPFPMPTKPV NMLPRTLNNN TSSSTSPSSL LFGLNHSGHG QSLIPNSSGH LSATQLLQKA 360 AQMGATMSGG PNPNPSGTTI TSMAPSTYGT ATGGYNMNPF MQQRDPNNIL QLETSPQFFG 420 ANYAQLGMFS GMLFDHTQNN GLLKNMEHEN NGTSNKIGFG GASNVSNGDT LTVDFLGLGG 480 SGNNNRAENF HDLQKQQHGQ QDQLGFGGID DHDDHLRMQR FGRS

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MSIITGSAAT GSFSSGNTGG EEVQQQQQEL LNHHANFHGS NSFLPTTPNI NSNGISTTQV  60
QKQPPPAKKK RNLPGTPDPT AEVIALSPKT LMATNRFVCE ICKKGFQRDQ NLQLHRRGHN  120
LPWKLKQRTS TEIIKRVYIC PESSCVHHDP LRALGDLTGI KKHFFRKHGE KTWKCDKCSK  180
KYAVQSDWKA HQKTCGTREY RCDCGTIFSR RDSFITHRAF CDAIAEENNR NQGVVPMSNN  240
IMGAPNQGQL SNSELVIPAS PPMNNKITDN PSSARSDTTT SDQFHHNFDA KNAPLTLEPQ  300
LPFPMPTKPV NMLPRTLNNN TSSSTSPSSL LFGLNHSGHG QSLIPNSSGH LSATQLLQKA  360
AQMGATMSGG PNPNPSGTTI TSMAPSTYGT ATGGYNMNPF MQQRDPNNIL QLETSPQFFG  420
ANYAQLGMFS GMLFDHTQNN GLLKNMEHEN NGTSNKIGFG GASNVSNGDT LTVDFLGLGG  480
SGNNNRAENF HDLQKQQHGQ QDQLGFGGID DHDDHLRMQR FGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-105	C2H2 family protein