PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007341.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 928aa    MW: 100930 Da    PI: 5.5221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007341.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.47.3e-841174401319
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilk 92 
                  lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaay+teAL+  l +++    k l  s +++++     +++aa++l++++sP++k
  PCP007341.1 117 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgSNMERLAAYYTEALQGLLEGTGGLHGKHLIGSGAHRNHghhPMDVTAAFQLLQDMSPYVK 214
                  68**********997776669***********9987769*******************77766777766666655556689999************** PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                  f+h+taNqaIleav +e+r+H++D+di++G+QW++L+qaL sR+egpp  +lRiT++++  s   s  +++etg+rL+ fA+++  pf+f+    ++ 
  PCP007341.1 215 FGHFTANQAILEAVVHERRIHVVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGGSRrqSIGTVQETGRRLTAFAASISQPFSFHQCRLDSD 312
                  ********************************************887666********97766778999***********************9999** PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseeri 283
                  e+++++ L++ +gE+l++n++l+l ++  +s ++     ++L+  k+lsP++v++ve+ea    ++ F+++f+++l++ysa++dslea++p +s++r+
  PCP007341.1 313 ETFQPSGLKLIKGETLVINCMLNLPHFSYRSPDSIA---SFLSGAKTLSPRLVTLVEEEARStWDGGFVAHFMDSLYHYSAVYDSLEAGFPMQSRARA 407
                  ***************************966665555...9*******************9997899******************************** PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerl 319
                   vEr++lg++iv  +a+  ++     e   +W erl
  PCP007341.1 408 LVERVFLGPRIVGSLAHIYRS---HGEVGCSWWERL 440
                  *************99998887...444445555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    
MAMAIDGHDE PDLDLSGCSP TTTSTNTVST DHWYAWSPVV DWEALAPIDQ LAGDDFQGLI  60
ESMVEDQDGS TELNSSSAQD EPLELEASND TTASGEMMTL TDEDGGANGE DLKGLRLVHL  120
LMAAAEALTG ANKSRDLARV ILVRLKELVS PTDGSNMERL AAYYTEALQG LLEGTGGLHG  180
KHLIGSGAHR NHGHHPMDVT AAFQLLQDMS PYVKFGHFTA NQAILEAVVH ERRIHVVDYD  240
IMEGIQWASL MQALVSRKEG PPTPHLRITA LSRGGSRRQS IGTVQETGRR LTAFAASISQ  300
PFSFHQCRLD SDETFQPSGL KLIKGETLVI NCMLNLPHFS YRSPDSIASF LSGAKTLSPR  360
LVTLVEEEAR STWDGGFVAH FMDSLYHYSA VYDSLEAGFP MQSRARALVE RVFLGPRIVG  420
SLAHIYRSHG EVGCSWWERL CALASRLPPL HQAEEVFKYL FGLEILSDDK FLVCRRQEHP  480
SSIRLPTSAW NECENAALRQ NWGSIVLARD LPLGCDSRQI VRYLYSLLIP SSAENAFLAY  540
WRGSAETPRK SFRISAKHFA SDQLFLNPSA QTPSATGGKN GLSSKKADVI AAAAAKKKFA  600
LSKVSKTAVQ LSQGKQPRPE PKVAGVALRP SKRVKNLAKK GEREIHVISS HTTGTTATNN  660
SPPAPVVQTP MEERPTTSCQ ATRAVPGVVA DLETTPLVEG PVVLGPTAAP ALEKITPPDD  720
ESDEGDEIPL TSRFRPARLS SANLPPVVKA AVQPDHPTVD LGKRPLVKPE ATTETPLHPQ  780
DENLDIPPQE VTSAFPSWEV ELDALIATTS GAVGSSMTAT KPFMSTSEPD VLVKLQELLS  840
LSASQILECQ GLDSVGTYLN DLAADVTSEL ARDFELGDKS CMTEYAASVR QVELLKMHKR  900
NRQAELTMGE VRWLELKAVV ETLIPSSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-124GRAS family protein