PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007336.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 748aa    MW: 81645.7 Da    PI: 5.2554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007336.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.83.8e-963897472374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  +++L+++Ae +++g+l laq +Larl+++ sp g+p+ R a+yf+eAL+  l+  ++s++++al+p      + + ++ a+k fse+sP+++f+++t+
  PCP007336.1 389 IDQLFNAAELIETGNLVLAQGILARLNHQLSPIGKPFSRTAFYFKEALQFLLNTnTSSNCSSALSP-----FSLIFKIGAYKSFSEISPVVQFANFTC 481
                  689*************************************************99333444444333.....3479*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R++g psl+iT++ s++++++ e++ t+e+L +fA+el++ fe +++   +le+l+  +L +
  PCP007336.1 482 NQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNGGVPSLKITAFISSSTHDEFEVSFTRENLIHFASELNLAFELELV---SLESLNSGSLGL 576
                  ***************************************************9*9****************************8...788888888755 PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                       E +aV + l + ++ ++++sl+     +L++vk+lsP++vv  ++ +d+++ +F +++++al+ ys l++s++a    + ++ +k+Er ll++
  PCP007336.1 577 PLhaSEGVAVAVNLPIGSFSNNPLSLPL----ILRFVKQLSPRIVVSLDRGSDRTDVPFPHQIIQALYSYSGLLESIDAA-NVNPDALQKIERYLLQP 669
                  4444888888888888999999999999....*********************************************665.34668999********* PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   i+++v+  +       ++  +Wr  + ++GF+p+++s+++++qa++l++++++ g+++e+++ slvl W+ + L+s+SaWr
  PCP007336.1 670 GIEKIVTGCHLL----PKRTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSLVLRWQCKDLISASAWR 747
                  ******988887....89999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    
MKAMPLPFEE FQGKGVLDFS SVSSSAAAAS DSFLSPPPPP PQKWNHHHQN SKENCYVGSS  60
EPTSVLDTRR SPSPPTSSST LSSSHGSGAS GGCGRSTDTT TAGVENPSRT PLEEQKCGPP  120
LGMEDWESVL SESPGQEQSI LRLIMSDIED PSLGLNTLLQ SSSGSDNLHQ DLEFSGGGFQ  180
DVVDQGGYGG GFEPNNNSGS LVSPSLNASS GPDFNFSNNA SNVETRSSNV RPNPAIFSAS  240
MSNPFLVSQS SGMFQQQQSM GLDEKPQIFN PQMVINENQA QFAQYPAMFM PLTYAQLQEH  300
HLLSPPPSKR LNSGELGPSY PVQRVPFSNP GQELVVRAQQ QLQFLPQHLQ QQRPTMPVAK  360
EKMMSPAEGC KEMMNQNQLQ QQQFQQAVID QLFNAAELIE TGNLVLAQGI LARLNHQLSP  420
IGKPFSRTAF YFKEALQFLL NTNTSSNCSS ALSPFSLIFK IGAYKSFSEI SPVVQFANFT  480
CNQAILEAVE GFNRVHVIDF DIGYGGQWAS FMQEVALRNG GVPSLKITAF ISSSTHDEFE  540
VSFTRENLIH FASELNLAFE LELVSLESLN SGSLGLPLHA SEGVAVAVNL PIGSFSNNPL  600
SLPLILRFVK QLSPRIVVSL DRGSDRTDVP FPHQIIQALY SYSGLLESID AANVNPDALQ  660
KIERYLLQPG IEKIVTGCHL LPKRTPSWRT LFLSSGFSPL TFSNFTESQA ECLVQRTPVG  720
GFHIEKRQSS LVLRWQCKDL ISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-127GRAS family protein