PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007261.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 705aa    MW: 78428.3 Da    PI: 6.2736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007261.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.75.8e-1323407041374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilkfshl 96 
                  l +lLl cAeav+++d  la+++L +l+  ++p gd+mqR+a++ft AL+arla + ++  +a +p++ s  + n  e l+++++ ++++P++kf+h+
  PCP007261.1 340 LLHLLLVCAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTDALSARLAATLTTNPRASAPQPFSpfPPNWLEILKIYQIVYQACPYIKFAHF 437
                  579****************************************************6655555555444441145699********************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++ v ++ledl+++++
  PCP007261.1 438 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 530
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  PCP007261.1 531 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 622
                  *******************9......344557****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+lekWr+ +e+ GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  PCP007261.1 623 EIRNIVACEGAERTERHERLEKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDNGCLLLGWQDRSIMAASAWR 704
                  *********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    
MMINTHCGSM GSIKSENSCS SDLRPPSPTE STTMSMSISE SKKITIPPSS ELDQQSTLTP  60
PSLNFPTLKF ELDDVEVQSP DHSIWESMFS EQFDTDFMVL SPVPNNMPNS PQIGGSATHQ  120
NYNYNYAQSM QGQSLSGSSS PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMEPAD  180
QNTQSLPVPV SIEDFLDDYQ RDGFIAAFPT TSSSKISGSS SQSYNHHDHL PASSTVPSAT  240
LDCVPMYNSS RFSRSASEAS LVTAGNSQLT QERSSGSGYQ QMSGAPLSQQ LQQERMQEKQ  300
QQPQKQHHHQ PQQQQNLHYN MMAPAIPMAH EQEQDSGLQL LHLLLVCAEA VAKEDYMLAR  360
RYLHHLNRVV TPLGDSMQRV ASCFTDALSA RLAATLTTNP RASAPQPFSP FPPNWLEILK  420
IYQIVYQACP YIKFAHFTAN QAIFEAFESE ERVHVIDLDI LQGYQWPAFM QALAARPGGA  480
PFLRITGVGP CIEAVKETGR CLTELALSLH VPFEFHAVGE QLEDLKPHMF NRRIGEALAV  540
NTVNRLHRVP VNCLGNLLAM IRDQAPNIVT LVEQEASHNG PYFLGRFLEA LHYYSAIFDS  600
LDATFPPDSA QRAKVEQYIF APEIRNIVAC EGAERTERHE RLEKWRKVME SKGFKSVALS  660
ANAVTQSKIL LGLYSCDGYR MTEDNGCLLL GWQDRSIMAA SAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-90GRAS family protein