PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007243.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 272aa    MW: 28817.9 Da    PI: 7.9112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007243.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-05108130123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+ksFs+   L  H  +H
  PCP007243.1 108 YKCSVCDKSFSSYQALGGHKASH 130
                  9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MALQALNSPT LAGSSPFQLE TKASSFSYVE PWTKRKRSKR PRLDTSHTEE EEYLALCLIM  60
LARGNRDGDL ADTMATKATT SAASHQIITQ SPSMEPSTSA APPANLSYKC SVCDKSFSSY  120
QALGGHKASH RKGSAAGSAV EGPSTSSTTT TSATTTATPS GRSHECSICH KSFPTGQALG  180
GHKRCHYDGG AAGSTATTSA ITSSEGVGST SHAVSHGHPR ETFDLNLPAL PDFSRDFFVS  240
GEDEVESPHP TKKPRLLLMV KPKMEISQDQ QN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-58C2H2 family protein