PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007114.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 1558aa MW: 173266 Da PI: 6.8561

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007114.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	295.2	1.7e-90	47	433	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++ ++ ++ s+++++ s+ +++++l ++++ P+++f++ + PCP007114.1 47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVFPTPMNFN-GSSSTSTIPSRLMSVTELagYVDLIPWHRFGYCA 143 689*************************************************777777654.44444445666666666689********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak.rledl.. 189 N+aI +a+eg+ +vHi+Df+i++++QWp+L++aL +Rpegpp lRiT+ + ++ + + ee+g rL +f + +vpfefnv+ + +le l PCP007114.1 144 SNSAICKAIEGCPKVHILDFSITHCMQWPTLIDALEKRPEGPPLLRITVPHWGPQVpplLNVSSEEVGLRLGNFSRFRNVPFEFNVIENSsSLELLlg 241 ********************************************998855557889999*******************944436665566 PP GRAS 190 ...eleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 ++++L ++++E+l+Vn++ lh+l ++++s r+++L++++sl+P+++vvv++++d++++s+ r++ +++y + fdsle+ l PCP007114.1 242 tqlNPSSLGLREDEVLVVNCQNWLHYLSdeplggipgHQDGS---MRNTFLNTIRSLNPRIIVVVDEDSDLTAPSLSSRITTCFNYLWIPFDSLETFL 336 6669********************44444433333333...666********************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 p++s +r+++E +g +i+n++ eg++r+er e+ + ++rl++ GF+++p+ e++ak++k+ll +++ g+ ++ e++ lvl+Wk+++ v+++aW PCP007114.1 337 PKDSTQRMNYESD-VGHKIENIIGFEGQQRIERLESGVTMSQRLRNIGFSSAPFCEETAKEVKALLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 432 *********.****************************************************.889999999**************** PP GRAS 374 r 374 + PCP007114.1 433 T 433 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 1558 aa Download sequence
MKTEVRGSIT SVSLQNPSTA LFTTSQGKSL TGALTGCLGS LDGACIEKLL LHCASALESN 60 DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VFPTPMNFNG SSSTSTIPSR 120 LMSVTELAGY VDLIPWHRFG YCASNSAICK AIEGCPKVHI LDFSITHCMQ WPTLIDALEK 180 RPEGPPLLRI TVPHWGPQVP PLLNVSSEEV GLRLGNFSRF RNVPFEFNVI ENSSSLELLL 240 GTQLNPSSLG LREDEVLVVN CQNWLHYLSD EPLGGIPGHQ DGSMRNTFLN TIRSLNPRII 300 VVVDEDSDLT APSLSSRITT CFNYLWIPFD SLETFLPKDS TQRMNYESDV GHKIENIIGF 360 EGQQRIERLE SGVTMSQRLR NIGFSSAPFC EETAKEVKAL LDEHASGWGM KREEDMLVLT 420 WKGHNSVFAT AWTAIASYCG KLSKLLGKSK VSSRNLKVVF HDFPGGAESF ELIARFCYNN 480 GSIYITPSNI SLLYCAAQFM EMNNSVAGRH NLLQKAENSF EEIRYWSWSE LLTALKQCQD 540 LLSVANSLSL VEKCLDTLVA RLPWTSEASP CPSTSSPDSS GIRFSCDTRS TESLKTTLSR 600 ATWWFEDLLV LGPNLVEMLV KAMVSRKLDH VIISRFLFYY QKSKFYTVKS DTKRTMAEMV 660 IEMLYMLDQS CVSCKSLFGI LRVMLNLNLN KSIRDKLEKM IGSQLDQATL DNLLVPSPQG 720 MNYLYDVNLV LRFLKSFLHD RGTRQADRPP MLLRKVAALV DLYIAEVAPD PCLKPSKFLA 780 LAITLPDSAR DSYDELYHAI DMYLQVHPGL SEDEKMKICC VLNYEKLSAE TCVHLSQNTR 840 FSSKSAVQAL VYQQSKLKSL LHATNNPKSY TDSPYSAISE AESRGLRKDD ANVQLVLYAG 900 KIDLSDDNEK LRTHLQGMQC RSSLFLRSIC NYASSTPSAI PPPPRRPRYR RLLAVRDNAA 960 SSVCDNASSS SILLRLLVSQ GKQIKRKALP VLKYKLMGEL ATRKHVEFIV SVEKRKDSFE 1020 AVAMEHIRMS GAYWGLTTLD LLGKLHVVDV EEVVSWVIQC QHDSGGFGGG IGHDPHILYT 1080 LSAVQVLALF DKLDVLDVEK VIETEFASTD ILGISLTTFA ALQDIENGGI SDRPDDAVDV 1140 YHTYFGVAGL SLLEYPGLKA IDPAYALPVD VVNRIILDSK GSYSTRLQSM AAHFPSLVTV 1200 SPTATDTGVR FHRPRHASLT AGLDSEPAGL LSEPAGLLIG LGLYPAFGPR NYRNLKSYVV 1260 ADVVMDLMTW TTQSSSVKKL HTFSSPFFCS TQLSSSASMA GSAFGIMAFS LSAFLSLALL 1320 GAGFQSKNKY LFGKVSLQIK LIEGDSAGTV TAFYMSSDGP QHNEFDFEFL GNTTGEPYSV 1380 QTNLYVNGVG NREQRLNLWF DPTTEFHSYS IFWNQRQVVF LVDETPIRVH TNMENKGVPF 1440 PKDQAMGVYS SIWNADDWAT QGGRVKTDWS HAPFIATYKG FEINACEYPV SIAAADKAKK 1500 CISNGGQKYW WDEPTLSELS VHQNHQLVWV KAHHMVYDYC TDSARFPVTP LECVHHRH

Sequence ? help Back to Top

Protein Sequence Length: 1558 aa Download sequence

MKTEVRGSIT SVSLQNPSTA LFTTSQGKSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VFPTPMNFNG SSSTSTIPSR  120
LMSVTELAGY VDLIPWHRFG YCASNSAICK AIEGCPKVHI LDFSITHCMQ WPTLIDALEK  180
RPEGPPLLRI TVPHWGPQVP PLLNVSSEEV GLRLGNFSRF RNVPFEFNVI ENSSSLELLL  240
GTQLNPSSLG LREDEVLVVN CQNWLHYLSD EPLGGIPGHQ DGSMRNTFLN TIRSLNPRII  300
VVVDEDSDLT APSLSSRITT CFNYLWIPFD SLETFLPKDS TQRMNYESDV GHKIENIIGF  360
EGQQRIERLE SGVTMSQRLR NIGFSSAPFC EETAKEVKAL LDEHASGWGM KREEDMLVLT  420
WKGHNSVFAT AWTAIASYCG KLSKLLGKSK VSSRNLKVVF HDFPGGAESF ELIARFCYNN  480
GSIYITPSNI SLLYCAAQFM EMNNSVAGRH NLLQKAENSF EEIRYWSWSE LLTALKQCQD  540
LLSVANSLSL VEKCLDTLVA RLPWTSEASP CPSTSSPDSS GIRFSCDTRS TESLKTTLSR  600
ATWWFEDLLV LGPNLVEMLV KAMVSRKLDH VIISRFLFYY QKSKFYTVKS DTKRTMAEMV  660
IEMLYMLDQS CVSCKSLFGI LRVMLNLNLN KSIRDKLEKM IGSQLDQATL DNLLVPSPQG  720
MNYLYDVNLV LRFLKSFLHD RGTRQADRPP MLLRKVAALV DLYIAEVAPD PCLKPSKFLA  780
LAITLPDSAR DSYDELYHAI DMYLQVHPGL SEDEKMKICC VLNYEKLSAE TCVHLSQNTR  840
FSSKSAVQAL VYQQSKLKSL LHATNNPKSY TDSPYSAISE AESRGLRKDD ANVQLVLYAG  900
KIDLSDDNEK LRTHLQGMQC RSSLFLRSIC NYASSTPSAI PPPPRRPRYR RLLAVRDNAA  960
SSVCDNASSS SILLRLLVSQ GKQIKRKALP VLKYKLMGEL ATRKHVEFIV SVEKRKDSFE  1020
AVAMEHIRMS GAYWGLTTLD LLGKLHVVDV EEVVSWVIQC QHDSGGFGGG IGHDPHILYT  1080
LSAVQVLALF DKLDVLDVEK VIETEFASTD ILGISLTTFA ALQDIENGGI SDRPDDAVDV  1140
YHTYFGVAGL SLLEYPGLKA IDPAYALPVD VVNRIILDSK GSYSTRLQSM AAHFPSLVTV  1200
SPTATDTGVR FHRPRHASLT AGLDSEPAGL LSEPAGLLIG LGLYPAFGPR NYRNLKSYVV  1260
ADVVMDLMTW TTQSSSVKKL HTFSSPFFCS TQLSSSASMA GSAFGIMAFS LSAFLSLALL  1320
GAGFQSKNKY LFGKVSLQIK LIEGDSAGTV TAFYMSSDGP QHNEFDFEFL GNTTGEPYSV  1380
QTNLYVNGVG NREQRLNLWF DPTTEFHSYS IFWNQRQVVF LVDETPIRVH TNMENKGVPF  1440
PKDQAMGVYS SIWNADDWAT QGGRVKTDWS HAPFIATYKG FEINACEYPV SIAAADKAKK  1500
CISNGGQKYW WDEPTLSELS VHQNHQLVWV KAHHMVYDYC TDSARFPVTP LECVHHRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-112	GRAS family protein