PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006807.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 1092aa MW: 119796 Da PI: 6.6499

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006807.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	735	757	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+sF++ ++ +H ++ PCP006807.1 735 FECPICGQSFRSEDEVSVHVESC 757 89*****************8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence
MMSSVFVFLL TISFLATLSS SATTSFVFGG CSQQKYLPGS PYESKVNSLL TSLVNSAMFS 60 TYNNFTFPGS SSAGSQDTLY GLFQCRGDLS NIDCSQCVAR SVSQLGTLCL DSCGGALQLE 120 GCFVKYDNAT FLGVEDKTVV VKKCGPSTGF DSDSLTKRDA VLAYLGTSDG TYRPYRVSGS 180 GSVQGVAQCV GDLSTSECQD CLSEAVGQLR SGCGTSAWGD MFLAKCYVRY SDGGYHSHGG 240 HDDHVDVDDD DDDNDELEKT LAILIGIIAA VALLVVFLYY FRKKLYGDEK AEQWAVLIRR 300 HVRSSEDFGR INRKSEQHRD LMALEWVVLG YAAAAEAIMV LLLTIPGLDG LRKGLVTVTR 360 NLLKPFLSVV PFCLFLLMDI YWKYETRPSC EGDSCTPSEH LRHEKSIMKS QRNALLIAAA 420 LIFYWLLYTV THLVVRIEQL NQRLRVKIPE LGHPGTHDAS VTTLSICREQ TAACLKSGKP 480 FSFRRTLELG CFLTLDVVAK YEDFSKMLTA SVHSIFHILD STPDLLSSDI STGMMRSIQN 540 KINVYGSTAF SVILVLKPLP ISTTLIILTG MATPVAIASL PRPQHSERQA LSSFFFFFQY 600 IDMGDMKDKF KGFMKNTFSS SSSGKFKGQG RVLGSSSSSG PADSVLTRPK QAPQSHPKPV 660 SNSNPNSSVA FPNPKPSPQK TQIIDQEKTQ IPDQSKAEPS IDSKPDRKTE TGFDPFDALT 720 TPGKRSQNGF TLNVFECPIC GQSFRSEDEV SVHVESCVNN LVETKSVEGV GVSGSPDNGS 780 ESSRSELEAR IGTFASGNPA AGSVEVVLRL LRNIVKEPEN VKFRRIRMSN PKIREAIGEV 840 VGGIELLEFV GFELKEEDGE MWAVMEVPKE EQINLMKRGI ALLEPPKVQE VDISASIASL 900 KVDEPVEPKK VDRQTRVFFS VSESVAARIE VPASFYNLSA TELKREAEMR KKKIEDSQML 960 IPKSFKEKQA KAAKRRYRKT VIRIQFPDGV VLQGVFSPLE PTSSLYEYVS SALKEPSLEF 1020 ELLNPVALKR RVIPHFPAAG KKAATLADED LMPSALVKFK PIETDSVVFT GLCNELLEVS 1080 EPLTSGSAAA PV

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence

MMSSVFVFLL TISFLATLSS SATTSFVFGG CSQQKYLPGS PYESKVNSLL TSLVNSAMFS  60
TYNNFTFPGS SSAGSQDTLY GLFQCRGDLS NIDCSQCVAR SVSQLGTLCL DSCGGALQLE  120
GCFVKYDNAT FLGVEDKTVV VKKCGPSTGF DSDSLTKRDA VLAYLGTSDG TYRPYRVSGS  180
GSVQGVAQCV GDLSTSECQD CLSEAVGQLR SGCGTSAWGD MFLAKCYVRY SDGGYHSHGG  240
HDDHVDVDDD DDDNDELEKT LAILIGIIAA VALLVVFLYY FRKKLYGDEK AEQWAVLIRR  300
HVRSSEDFGR INRKSEQHRD LMALEWVVLG YAAAAEAIMV LLLTIPGLDG LRKGLVTVTR  360
NLLKPFLSVV PFCLFLLMDI YWKYETRPSC EGDSCTPSEH LRHEKSIMKS QRNALLIAAA  420
LIFYWLLYTV THLVVRIEQL NQRLRVKIPE LGHPGTHDAS VTTLSICREQ TAACLKSGKP  480
FSFRRTLELG CFLTLDVVAK YEDFSKMLTA SVHSIFHILD STPDLLSSDI STGMMRSIQN  540
KINVYGSTAF SVILVLKPLP ISTTLIILTG MATPVAIASL PRPQHSERQA LSSFFFFFQY  600
IDMGDMKDKF KGFMKNTFSS SSSGKFKGQG RVLGSSSSSG PADSVLTRPK QAPQSHPKPV  660
SNSNPNSSVA FPNPKPSPQK TQIIDQEKTQ IPDQSKAEPS IDSKPDRKTE TGFDPFDALT  720
TPGKRSQNGF TLNVFECPIC GQSFRSEDEV SVHVESCVNN LVETKSVEGV GVSGSPDNGS  780
ESSRSELEAR IGTFASGNPA AGSVEVVLRL LRNIVKEPEN VKFRRIRMSN PKIREAIGEV  840
VGGIELLEFV GFELKEEDGE MWAVMEVPKE EQINLMKRGI ALLEPPKVQE VDISASIASL  900
KVDEPVEPKK VDRQTRVFFS VSESVAARIE VPASFYNLSA TELKREAEMR KKKIEDSQML  960
IPKSFKEKQA KAAKRRYRKT VIRIQFPDGV VLQGVFSPLE PTSSLYEYVS SALKEPSLEF  1020
ELLNPVALKR RVIPHFPAAG KKAATLADED LMPSALVKFK PIETDSVVFT GLCNELLEVS  1080
EPLTSGSAAA PV