PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006757.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 514aa    MW: 57960.6 Da    PI: 6.4092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006757.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.32.4e-1091525081374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL+ecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+++s+ ++++ l   ++       + +a+++f+ +sP++kf+h+t
  PCP006757.1 152 LITLLFECAVAISVDNLPEAHRMLLELTHMASPYGpSCAERVVAYFAKAMASRVVNSWLGICSPLVNYKS-------VHSAFQVFNTISPFVKFAHFT 242
                  5789*******************************9999***********************87765555.......46899**************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp+lR+Tgvg     s+e l etg++L++fA++lg++fef + +++++ +++ ++ +
  PCP006757.1 243 SNQAILEAFHHRDRVHILDLDIMQGLQWPALFHILATRMEGPPHLRMTGVGT----SSEILLETGKQLSNFAKRLGLSFEFLP-IVRTVGEVDASMVQ 335
                  ****************************************************....99*************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v++gE+laV++    h+l+d ++s  +    +L+l+  l P++v++veq+++h s+sFl+rf+ +l+yys++fdsle+ lp+++  r+kvE+ ++ re
  PCP006757.1 336 VQRGETLAVHWLQ--HSLYDATGSDWK----TLRLIEVLAPRIVTLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLPSDNPSRHKVEHGMFYRE 426
                  ************9..999999999999....**********************.899***************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i n++a  g +r  +  ++++Wr+ l++   F +v++s + ++qa+l+l++++  +gy++ + +g++ lgWkd +L+++SaW+
  PCP006757.1 427 INNILAIGGPARSGED-KFRQWRSELGArREFMQVEMSGNSMAQAQLILNMFPpTHGYSLVQGDGTIRLGWKDTSLYVASAWT 508
                  ***********77665.5********8659****************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    
MKAEFEMAHG TVNIIQSHES WINYPNSNVT GFENNPISNS KPVENRFINL ERSELSQWVE  60
HITKQLIDDL PEPAPTNTAS ADTLQTSEDY FVPSSLSTDL ISPRKVPRRS YGEHEHHELQ  120
WGNELQLHAD NNDVRARGGN NMSKLDEHGL TLITLLFECA VAISVDNLPE AHRMLLELTH  180
MASPYGPSCA ERVVAYFAKA MASRVVNSWL GICSPLVNYK SVHSAFQVFN TISPFVKFAH  240
FTSNQAILEA FHHRDRVHIL DLDIMQGLQW PALFHILATR MEGPPHLRMT GVGTSSEILL  300
ETGKQLSNFA KRLGLSFEFL PIVRTVGEVD ASMVQVQRGE TLAVHWLQHS LYDATGSDWK  360
TLRLIEVLAP RIVTLVEQDM SHSGSFLDRF VGSLHYYSTM FDSLESYLPS DNPSRHKVEH  420
GMFYREINNI LAIGGPARSG EDKFRQWRSE LGARREFMQV EMSGNSMAQA QLILNMFPPT  480
HGYSLVQGDG TIRLGWKDTS LYVASAWTCS HASR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-141GRAS family protein