PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006701.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 366aa MW: 40585 Da PI: 6.8774

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006701.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G g+W++++ g+ R+ k+c++rw +yl PCP006701.1 14 KGPWTPEEDIILVSYIQERGAGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.2	2.5e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PCP006701.1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ ERGAGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 TGLDGHDHHN DQDGFSGDSL DQPISKGQWE RRLQTDIHMA KQALSEALSI NKPSIISTSA 180 TTSHDLHLQA LKPSINIGNY NINDNPITST RPHQASTYAS NTDNIAKLLE NWMKNSPKVS 240 THQTNADQTN SFNNNNKGGT TTSRGCSMST SSEGAHSAAT TPDQAFDSLF SFNSSPSDVS 300 QSMSVDENNA NFTADQTSCL FQDESKPNLE GQGPLTLLEK WLCDDAALHA HEDLINMSFE 360 NGAGLF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ ERGAGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
TGLDGHDHHN DQDGFSGDSL DQPISKGQWE RRLQTDIHMA KQALSEALSI NKPSIISTSA  180
TTSHDLHLQA LKPSINIGNY NINDNPITST RPHQASTYAS NTDNIAKLLE NWMKNSPKVS  240
THQTNADQTN SFNNNNKGGT TTSRGCSMST SSEGAHSAAT TPDQAFDSLF SFNSSPSDVS  300
QSMSVDENNA NFTADQTSCL FQDESKPNLE GQGPLTLLEK WLCDDAALHA HEDLINMSFE  360
NGAGLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-103	MYB family protein