PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006185.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 678aa    MW: 74662 Da    PI: 5.6818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006185.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.9e-1292946631374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+lL++c+ea+  ++ +++++++a+l elasp+g+++ Rl ay+teAL+ r++r +++++++ +p+e +++++ ++  a++l+++vs i+kf h+t 
  PCP006185.1 294 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPKGSAISRLSAYYTEALSLRVTRLWPHVFQINAPREFDRRDE-DSGIAVRLLNQVSAIPKFVHFTS 390
                  6899*****************************************************************96655.5556779**************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+La R+++p ++RiTg+g+    sk+el+etg+rLa fA +l++pfef++ v++rled+++++L+v
  PCP006185.1 391 NEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLALRTNPPSHVRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVRVWMLHV 483
                  ***************************************************....***************************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  k++E++aVn+v+qlh++l + +    + +++L lv+s++P++v ++eqea+hn++++ +r++++l+yysa+fds+ ++lp  s++rikvE++ ++rei
  PCP006185.1 484 KEHESVAVNCVFQLHKTLYDMTGG--ALRDFLGLVRSTNPTIVLMAEQEAEHNEARLETRVSNSLKYYSAIFDSIGSSLPLGSQARIKVEEM-FAREI 578
                  *****************9554443..4589**************************************************************.***** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                  +n+vaceg++r erhe++ekWr+++e+ GF+ + ++e+++ q + ll++++s+ y v+++      ++l+l W+d+pL++vSaW+
  PCP006185.1 579 RNIVACEGSDRLERHESFEKWRKWMEQGGFRCAGITEREMLQSQFLLKMYASESYAVKKQeqdgaAEALTLSWMDQPLYTVSAWT 663
                  **********************************************************776667677899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KAGSCSLKQS IRLPPLATTG PVSATAAFVE AGKENRNHFW REKKIGKRFA  120
EPVDDDESCR NRAKRKRGCG DNGGGLGLGQ LGGGNFWFQP GFQLPPRTTQ LPFSLTCSGD  180
DERVCYVPGE AISQPLPLSN SPWLDSIVTE ITDLGKKDGG GEDSRGLVRE ASAASSTSSE  240
SQSLALRVNE SASEHEAGNG TRNPYVPYGG AGVVAEEEED DDDESEAEHI GFELVSLLTA  300
CVEAIGLKNI AAINHFIAKL GELASPKGSA ISRLSAYYTE ALSLRVTRLW PHVFQINAPR  360
EFDRRDEDSG IAVRLLNQVS AIPKFVHFTS NEILLRAFEG KDRVHIIDFD IKQGLQWPSL  420
FQSLALRTNP PSHVRITGIG ESKQELNETG DRLAGFAGAL NLPFEFHPVV DRLEDVRVWM  480
LHVKEHESVA VNCVFQLHKT LYDMTGGALR DFLGLVRSTN PTIVLMAEQE AEHNEARLET  540
RVSNSLKYYS AIFDSIGSSL PLGSQARIKV EEMFAREIRN IVACEGSDRL ERHESFEKWR  600
KWMEQGGFRC AGITEREMLQ SQFLLKMYAS ESYAVKKQEQ DGAAEALTLS WMDQPLYTVS  660
AWTTVDVAGS SSSFSEPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein