PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005868.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 306aa    MW: 33092.9 Da    PI: 8.9366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005868.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08654347
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                      W +eEd+ + +a++++  +      W++Ia+ ++  ++  ++k ++q++
      PCP005868.1  6 VWNKEEDKEFENAIAMHWIDenskeMWEKIAELVP-SKSMGELKQHYQML 54
                     6*****************99***************.************86 PP
2Myb_DNA-binding38.92e-12137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      PCP005868.1 137 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 181
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MSSSSVWNKE EDKEFENAIA MHWIDENSKE MWEKIAELVP SKSMGELKQH YQMLVDDVGA  60
IEAGRVSPPN YAVDEAANTL SSSKDSGHRA SSSGASASEK RLNCGHGGGF SGLGHDSAGH  120
GGKGGSRADQ ERKKGIPWTE EEHRLFLLGL DKFGKGDWRS ISRNFVISRT PTQVASHAQK  180
YFIRLNSMNR DRRRSSIHDI TSVNNGDVSS HQQPPITGQQ TNTYAPSAGT AIRVGGPQTA  240
KHRPQPHMAG LGMYGAPMGH PVSAPPGHMA SAVGTPVMLP PGHHPHAHPP YVVPVAYPMA  300
HPTMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-76MYB family protein