PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005865.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 441aa MW: 50310.9 Da PI: 8.5135

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005865.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.1	1.5e-42	169	330	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa..sec...eaesss 79 + k+drhski T++g+RdRR+Rls+e+a +fF Lqd LGfdk+skt+eWLl q++paik+l ++ ++s+a ++c + + PCP005865.1 169 TCKRDRHSKINTARGPRDRRMRLSLEVALKFFGLQDALGFDKPSKTVEWLLIQSEPAIKKLSRDhhrqfnykhmvrcakTTSPAtsESCevlS---GV 263 689****************************************************************999999999833333333443331...22 PP TCP 80 ssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +a + k ++++ k ++q+++++++ lak sr++arararertrekm+ ++k PCP005865.1 264 DEAP-T--NvnissngkvrsrgiKPSAKERKIVHRQSRKSAFHPLAKASRENARARARERTREKMQRSKK 330 2222.1..0112344567777875555555777777777789*********************98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MFPSHNNNLN ELVPVSYPHV DQSIFHSWPF HHDNSTLTPN SLTILNPNPN SRQQGGEENL 60 HQQHQHLPFS LLYFPSPFED DDVLLFDQQH HHQEPDHIEL SLHESQEPPY FMKEAAAAAA 120 AADDNTVVGN DHQKITTTSV NRKMVDWDSN KKGHRMNMDD QPQIPRRRTC KRDRHSKINT 180 ARGPRDRRMR LSLEVALKFF GLQDALGFDK PSKTVEWLLI QSEPAIKKLS RDHHRQFNYK 240 HMVRCAKTTS PATSESCEVL SGVDEAPTNV NISSNGKVRS RGIKPSAKER KIVHRQSRKS 300 AFHPLAKASR ENARARARER TREKMQRSKK PSNDQANSSR LSSWNPFETE EESPTHNNNM 360 TSTTNDQPNS RVVLRDYPDE VEEPLSSSQA GDIQDMVVDH GTTHDAMVVL GKWSSPPVFT 420 RLQQNTGISQ EVTSTTKFQL L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MFPSHNNNLN ELVPVSYPHV DQSIFHSWPF HHDNSTLTPN SLTILNPNPN SRQQGGEENL  60
HQQHQHLPFS LLYFPSPFED DDVLLFDQQH HHQEPDHIEL SLHESQEPPY FMKEAAAAAA  120
AADDNTVVGN DHQKITTTSV NRKMVDWDSN KKGHRMNMDD QPQIPRRRTC KRDRHSKINT  180
ARGPRDRRMR LSLEVALKFF GLQDALGFDK PSKTVEWLLI QSEPAIKKLS RDHHRQFNYK  240
HMVRCAKTTS PATSESCEVL SGVDEAPTNV NISSNGKVRS RGIKPSAKER KIVHRQSRKS  300
AFHPLAKASR ENARARARER TREKMQRSKK PSNDQANSSR LSSWNPFETE EESPTHNNNM  360
TSTTNDQPNS RVVLRDYPDE VEEPLSSSQA GDIQDMVVDH GTTHDAMVVL GKWSSPPVFT  420
RLQQNTGISQ EVTSTTKFQL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	5e-24	TCP family protein