PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005593.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 857aa MW: 96613.9 Da PI: 6.6815

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005593.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.6e-21	573	659	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+e+ Fsvr+++skk+ ++gei++++fvC+keg++++e +e++++ t+ gCka+l v ++k g + vt +++ HnH+++ PCP005593.1 573 EFYNNYAREAWFSVRMHSSKKN-KDGEIMRKEFVCNKEGSNTKEWIG--DEQKRHGLTKYGCKARLIVVRSKFGGYAVTIFDEGHNHPMT 659 6*************999998.8899************9988..8889999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MAMRAHEAWV RVLLLFNVGG HSVLNAIAGA SSDDLPVICM VGALEAPTPM TMELIIGFFT 60 ILLGCLILAK SLGAFRKSLV ISLRGCSGTS SGQGSEPVMI DGQKLRSADA ADAFVELADA 120 CGYALAVLPT AKGLLPSAKG LLPSAKGILP KQHPHFMGTY WVAISTDFVL RLWRLQMHNM 180 SFKYNMDQLV GQLEELLGML KLFLQSECLI SLVIAAFRTT PKVRLVHISQ ASHQAQISCF 240 CCEAELIEAF EIANGDKKKW LCFIEVLVHR EDCSKELLQF GSRAAAADGR PPRPKEFVFV 300 LWRIWKSQNE MVFNGVLVNP MEMVHVVRKQ ILEFRVAQGA ERGEPDELEL RQGETFAGQL 360 VRWRRPSFGV LKINWDGTCT AAMAEAAALR AAVQVCIEMG CQNVDIESDS LMLIQMINKE 420 YAIDATLEWF LYDIGLLVSQ LGRVMFMFVN RNGNAADHVV VLCVALFERY LWRGSQKKSS 480 CVSITIMEAN EMAIEVTGTV EMPIQVMEAN EMIIEVTGTD EMPVQVMEAN EMQGPMENQL 540 EIVAGICFFY PQVTNEFKPT IGQRFEALDE VLEFYNNYAR EAWFSVRMHS SKKNKDGEIM 600 RKEFVCNKEG SNTKEWIGDE QKRHGLTKYG CKARLIVVRS KFGGYAVTIF DEGHNHPMTS 660 PRRHHLLKSH RKVTKCHKIL ADQLNVANIP PHKQFDILGL QVGGIENVGC TQEDLYNHRR 720 KVRNKMKGYD GKMLHDHFLL KQERNSEFTF KIQANEEHKI TQCFWADASW QAYKFYGDVV 780 IFDTTYSTNW YIIINDEASK FFCEAMDAVN EKIKPLVGDT NENVEPSATK GDMECRAKRK 840 LIVDDVGFLE LDPVKTK

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MAMRAHEAWV RVLLLFNVGG HSVLNAIAGA SSDDLPVICM VGALEAPTPM TMELIIGFFT  60
ILLGCLILAK SLGAFRKSLV ISLRGCSGTS SGQGSEPVMI DGQKLRSADA ADAFVELADA  120
CGYALAVLPT AKGLLPSAKG LLPSAKGILP KQHPHFMGTY WVAISTDFVL RLWRLQMHNM  180
SFKYNMDQLV GQLEELLGML KLFLQSECLI SLVIAAFRTT PKVRLVHISQ ASHQAQISCF  240
CCEAELIEAF EIANGDKKKW LCFIEVLVHR EDCSKELLQF GSRAAAADGR PPRPKEFVFV  300
LWRIWKSQNE MVFNGVLVNP MEMVHVVRKQ ILEFRVAQGA ERGEPDELEL RQGETFAGQL  360
VRWRRPSFGV LKINWDGTCT AAMAEAAALR AAVQVCIEMG CQNVDIESDS LMLIQMINKE  420
YAIDATLEWF LYDIGLLVSQ LGRVMFMFVN RNGNAADHVV VLCVALFERY LWRGSQKKSS  480
CVSITIMEAN EMAIEVTGTV EMPIQVMEAN EMIIEVTGTD EMPVQVMEAN EMQGPMENQL  540
EIVAGICFFY PQVTNEFKPT IGQRFEALDE VLEFYNNYAR EAWFSVRMHS SKKNKDGEIM  600
RKEFVCNKEG SNTKEWIGDE QKRHGLTKYG CKARLIVVRS KFGGYAVTIF DEGHNHPMTS  660
PRRHHLLKSH RKVTKCHKIL ADQLNVANIP PHKQFDILGL QVGGIENVGC TQEDLYNHRR  720
KVRNKMKGYD GKMLHDHFLL KQERNSEFTF KIQANEEHKI TQCFWADASW QAYKFYGDVV  780
IFDTTYSTNW YIIINDEASK FFCEAMDAVN EKIKPLVGDT NENVEPSATK GDMECRAKRK  840
LIVDDVGFLE LDPVKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-32	FAR1 family protein