PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005557.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 692aa MW: 80539.3 Da PI: 5.9038

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005557.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1e-21	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel PCP005557.1 69 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPMKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 160 59******************8888.***************************************99867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MTSIPLKNIW IRRQQCPCGD WKCYVTYEGD SEEASSIASQ LVKNDSTTSE AMVSPYVGMV 60 FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPM KKKPTGEHHR 120 DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE 180 RILLLSKAGF PIHHIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDSLLTEKRE 240 NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ 300 SITYGVLFGA WLGIDNHGRT IFFACVLLQD ETRRSFSWAL QTFVRFMRGR FPQTILTDLD 360 PELRDAIRSE LPGTKHVISI WDILPKISSW FSVLPGPRCI EFKSEFDELY RLESSEDFEL 420 QWNQMISMFG LTTDKHIALL YSFRESWAQS YIKGYFLACM ATTIYSKSVD AFFKGIFSAQ 480 TCLRSFFEQV GISAKFQNQS HREMQYMHIK TSIPIEEHAR SILTPFAFNA FQHELVLAMQ 540 YAVSEMANGS YLVQHFKKIE GERLVIWIPE EEQVHCSCKE FESSGLLCRH SLRVYVVKNY 600 FQLPDKYCLN RWRKEGSLDY YDDHIARTSD EEWFQDYQCL TDTLLTESSV TKERSDYIHR 660 ELTTQLTRIL NEVRNMPECE GVAMDLTFSP TG

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MTSIPLKNIW IRRQQCPCGD WKCYVTYEGD SEEASSIASQ LVKNDSTTSE AMVSPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPM KKKPTGEHHR  120
DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHHIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDSLLTEKRE  240
NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ  300
SITYGVLFGA WLGIDNHGRT IFFACVLLQD ETRRSFSWAL QTFVRFMRGR FPQTILTDLD  360
PELRDAIRSE LPGTKHVISI WDILPKISSW FSVLPGPRCI EFKSEFDELY RLESSEDFEL  420
QWNQMISMFG LTTDKHIALL YSFRESWAQS YIKGYFLACM ATTIYSKSVD AFFKGIFSAQ  480
TCLRSFFEQV GISAKFQNQS HREMQYMHIK TSIPIEEHAR SILTPFAFNA FQHELVLAMQ  540
YAVSEMANGS YLVQHFKKIE GERLVIWIPE EEQVHCSCKE FESSGLLCRH SLRVYVVKNY  600
FQLPDKYCLN RWRKEGSLDY YDDHIARTSD EEWFQDYQCL TDTLLTESSV TKERSDYIHR  660
ELTTQLTRIL NEVRNMPECE GVAMDLTFSP TG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein