PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005523.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 376aa    MW: 41817.7 Da    PI: 9.6291
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005523.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd +l d++ + G g+W++ ++  g++R++k+c++rw +yl
      PCP005523.1 15 KGPWTTEEDAKLMDYILRNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding538.2e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+  +++++  lG++ W++Ia +++ gRt++++k++w++
      PCP005523.1  68 RGKFSEEEERVIINLHSVLGNK-WSKIATHLP-GRTDNEIKNYWNT 111
                      89********************.*********.***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MVRAPCCDEE SSLKKGPWTT EEDAKLMDYI LRNGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERVII NLHSVLGNKW SKIATHLPGR TDNEIKNYWN TQLRKKLLHM  120
GIDPNTHKPR TDLNQLLDLT KLLSAASVGN SNMMTSLWDN ALKLKAAAGA AQLTKMQLLQ  180
HLYMMPVVRT SNSSVPPNNY NVDLMNPSSS LFGSHILNPI GGGHVSGAST MLSGQEWNQQ  240
ADVVDGFHVI SNSLEGFEGG FGAQGVISSS SPDQENMSSS CCYDDIYLQT KNHPLPALVS  300
SSSVYPGTSS SAANQMEMSM SGPAAPARTA IFDAWEKLLD DETSESYWKD ILEEKKKKKK  360
NKKKKKKKKK IDAVFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355363KKKKKKNKK
2355367KKKKKKNKKKKKK
3355368KKKKKKNKKKKKKK
4355370KKKKKKNKKKKKKKKK
5356368KKKKKKNKKKKKK
6356369KKKKKKNKKKKKKK
7356371KKKKKKNKKKKKKKKK
8357370KKKKKKNKKKKKKK
9359367KKKKKKNKK
10362368KKKKKKK
11362370KKKKKKNKK
12363369KKKKKKK
13364370KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-77MYB family protein