PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005210.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 986aa MW: 110784 Da PI: 6.792

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005210.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw +yl PCP005210.1 14 RGAWTPEEDRKLLAYIQLHGHGSWRSLSQKAGLKRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.9	7.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l PCP005210.1 67 RGNFSLHEDQTIIQLHALLGNR-WSAIATYLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence
MRKSGSYAAS GIKRGAWTPE EDRKLLAYIQ LHGHGSWRSL SQKAGLKRCG KSCRLRWINY 60 LRPDIKRGNF SLHEDQTIIQ LHALLGNRWS AIATYLPKRT DNEIKNYWNT HLKKRLAKIG 120 LDPATHKPKA AILGSANGDP KNLSNLSHIA QWESARIQAE ARFVNESKPR MHASAPAASL 180 SDEHHQFAPP LVPQCLDILR ASAWESLISM SKSSSRSAAL IDDTNGQGNV SFGDHHHVHD 240 HGVNMDGQDY GPNFEAPTYI PTSDQQLSSL MGYDDATLMS VPTGSMDIYE LFGQYCGNEC 300 SESLAALHHN IGSEFEDAWN SLEQIIGSVY KDPEKIRFPS TPNSVDSPSK NQSHPHTCQV 360 PVSRSLSTNA RVEVDSPVCR HLRHNIGLTA TRRRQSLRHS LLCNWNQKFS AAVELHGKAC 420 VSGRDEVDGV VLGIRSYSSI EEVKEAYENI SSVWNSDGQA PDTSDFIKIQ YAFELLANPV 480 WKRNYDIFGI DEQIDVVEKV TEQYKGESFS KIDLPLLESV AYETEDHDGT VMTSKDFQTM 540 FEGNKPWLIQ VCSFGSKSYY QFSDVWKKIA VFLNGVANTG MLELGELQLA THFAERKPTG 600 QPFFRNGIPS LVAFPPGCKT ANCFIRFEVE SAPAIVILKD PGVKPVVYHG SFDYSQFLNI 660 MEQNKQQELP QLRSTTSMEL GCDSRGYSRA GYDTVTWYCA VVAGRHSPEL SNMRGAIRRV 720 QEKLSNEVES RSADEVQSIA PAAEALKSKR LTFAWLDGES QKKYCLFFLQ SENSHETCGE 780 RTDMTDVPQL FIVRYKRNVT EESEKPEKKP KSIWDAVQDQ ELDPASQLVA KYNGSDDTLE 840 ITKWISQIIN DGDSRDLPHY RTRTPHLVPE DSEPIWSAGV QRIPSTNTIM QSIRGMLRGV 900 YDRVGDPRLG PMLLLAALMS FGTIWLRRSQ ATPVSSQPNQ PNSKDESRRR RRDRARNVLN 960 QDLPPSITDM EPRDSYEMPL SGSDSE

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence

MRKSGSYAAS GIKRGAWTPE EDRKLLAYIQ LHGHGSWRSL SQKAGLKRCG KSCRLRWINY  60
LRPDIKRGNF SLHEDQTIIQ LHALLGNRWS AIATYLPKRT DNEIKNYWNT HLKKRLAKIG  120
LDPATHKPKA AILGSANGDP KNLSNLSHIA QWESARIQAE ARFVNESKPR MHASAPAASL  180
SDEHHQFAPP LVPQCLDILR ASAWESLISM SKSSSRSAAL IDDTNGQGNV SFGDHHHVHD  240
HGVNMDGQDY GPNFEAPTYI PTSDQQLSSL MGYDDATLMS VPTGSMDIYE LFGQYCGNEC  300
SESLAALHHN IGSEFEDAWN SLEQIIGSVY KDPEKIRFPS TPNSVDSPSK NQSHPHTCQV  360
PVSRSLSTNA RVEVDSPVCR HLRHNIGLTA TRRRQSLRHS LLCNWNQKFS AAVELHGKAC  420
VSGRDEVDGV VLGIRSYSSI EEVKEAYENI SSVWNSDGQA PDTSDFIKIQ YAFELLANPV  480
WKRNYDIFGI DEQIDVVEKV TEQYKGESFS KIDLPLLESV AYETEDHDGT VMTSKDFQTM  540
FEGNKPWLIQ VCSFGSKSYY QFSDVWKKIA VFLNGVANTG MLELGELQLA THFAERKPTG  600
QPFFRNGIPS LVAFPPGCKT ANCFIRFEVE SAPAIVILKD PGVKPVVYHG SFDYSQFLNI  660
MEQNKQQELP QLRSTTSMEL GCDSRGYSRA GYDTVTWYCA VVAGRHSPEL SNMRGAIRRV  720
QEKLSNEVES RSADEVQSIA PAAEALKSKR LTFAWLDGES QKKYCLFFLQ SENSHETCGE  780
RTDMTDVPQL FIVRYKRNVT EESEKPEKKP KSIWDAVQDQ ELDPASQLVA KYNGSDDTLE  840
ITKWISQIIN DGDSRDLPHY RTRTPHLVPE DSEPIWSAGV QRIPSTNTIM QSIRGMLRGV  900
YDRVGDPRLG PMLLLAALMS FGTIWLRRSQ ATPVSSQPNQ PNSKDESRRR RRDRARNVLN  960
QDLPPSITDM EPRDSYEMPL SGSDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	4e-81	MYB family protein