PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005193.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 375aa MW: 41667.9 Da PI: 6.6383

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005193.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl PCP005193.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.1	2.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PCP005193.1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLH 120 AGLDGHDHHN HQDGFSGNSH DQPISKGQWE RRLQTDIHMA KQALCEALSI DKPNVISTTT 180 ASHDLHLQDL KPSINIGNYN INDNPSTSTS TRPHHTSTYA SNAENIAKLL ENWMKNSPKV 240 SAHQTNSDQT NADQTNSFNN NNNDNDNKGG ATATTIGRSM STSSEGAHSA TTTPDQAFDS 300 LFSFNSSPSD VSQSMSVDEN NANFIADQAS CLFQDESKPN LEGQVPLSLL EKWLLDDAAP 360 HAHEDLINIS LENGF

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLH  120
AGLDGHDHHN HQDGFSGNSH DQPISKGQWE RRLQTDIHMA KQALCEALSI DKPNVISTTT  180
ASHDLHLQDL KPSINIGNYN INDNPSTSTS TRPHHTSTYA SNAENIAKLL ENWMKNSPKV  240
SAHQTNSDQT NADQTNSFNN NNNDNDNKGG ATATTIGRSM STSSEGAHSA TTTPDQAFDS  300
LFSFNSSPSD VSQSMSVDEN NANFIADQAS CLFQDESKPN LEGQVPLSLL EKWLLDDAAP  360
HAHEDLINIS LENGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-103	MYB family protein