PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004995.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 273aa MW: 30897.2 Da PI: 6.5111

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004995.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde l d+vk +G g+W+ +a++ g++R++k+c++rw++yl PCP004995.1 14 RGAWCAEEDEVLTDYVKTHGEGQWRHVAKKAGLNRSGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.3	1.1e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+ PCP004995.1 67 KGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWN 109 6889****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGRKPAGDTD GLKRGAWCAE EDEVLTDYVK THGEGQWRHV AKKAGLNRSG KSCRLRWLNY 60 LKPGVKKGNI SPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNI SLSKRIQEER 120 PRRIINNKQA PNAGDNHHQR GNYCSNPSKD EDDQSNPVKS NPVALSDISD DRDQNSSLSF 180 LRDFDSYIHG LSHEAEMING FGNYMVDDSN FVGHGDGTKC EDLVLREDAE AAKWKILGAT 240 SDHLLFQPNH EDVDLHAISA FLNSQDGYHQ WIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	1e-53	MYB family protein