PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP004993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36818 Da PI: 6.9261 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l +++k++G g+W+ +++ g++R++k+c++rw++yl PCP004993.1 14 RGAWTAHEDKVLTEYIKLHGEGRWRNLPKKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PCP004993.1 67 RGNITPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence |
MGRSPCCAKE GMNRGAWTAH EDKVLTEYIK LHGEGRWRNL PKKAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVHDHQ 120 QGSASDLKHR KNGEPNSKKA KMMDMAAPSS HVVRTKAAKC TKVFINPHPH KVPLGHDHQH 180 CTEETNAGGL MFGDKPAAMD DDHINRTRSF SSFSNINADQ ENVTSDFLAD FDMDEISLAN 240 LLNSDFPEIN HDELNHNGSD NGMSHCVDET ARFFSEGMLQ HWKNGGSDDG DDQVQVQPNL 300 VLNFHSYNSF LGSDHQGEEC LGVGESR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 6e-63 | MYB family protein |