PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004718.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37144 Da    PI: 6.1531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004718.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.2e-0835741250
                 HHHHHHHHHHHHHHHHHHHHT-EEEEE.EE-TTSEEEEEE CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevavi.ifsstgklyeys 50
                 +  +R ++++ KA  L  LC+a+v+v+ +++++ k++ ++
  PCP004718.1 35 STMQRSATVMRKAMNLNKLCGAQVCVVaYIGPNTKVKVWP 74
                 4478*********************99678******9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MKGNSARPRR DNGEEQRLAK RRKLRRQQQS EQRKSTMQRS ATVMRKAMNL NKLCGAQVCV  60
VAYIGPNTKV KVWPEDEDLA KAIISKHQAA AIKNRNNPKT REVNIYNFFQ GKMKQLEQKI  120
ELNDKELDAL SEDSLMDLAA FLESKLQKLD YLVRSIEGKS VVDLPYGYDD CNLVHKEPHV  180
QQPLFDPILN CSGNPMMMGF EGQTMFSTAT ATWPWQNSLA DGHYQSAGFA NCFNCNMMTA  240
GLVDPSVSAE AGTSGPSTLA VDQNFAWMGS DNWENNVNVL GVEDRPGSMP VFDGSDNFGV  300
MNNNLLPQQC MPSQLDDSFP ITSWRNLLSF E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.11e-09M-type_MADS family protein