PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004715.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 383aa MW: 42064.5 Da PI: 8.5136

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004715.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101	2.1e-31	56	197	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec....eaesssssasnsssgk 89 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ + +++++ +++++++ ++ PCP004715.1 56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQEKLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPPgtfglnH-PslvlTSSHDDQTNAHPQLSH 152 689*************************************************************888884443321.122332222223333334445 PP TCP 90 aaksaakskksqksaasalnlakesrakararare.rtrekmrik 133 + + + +s+ ++s+ nl++ rak+++ ar+ r++e+ ++ PCP004715.1 153 NHRGEGPSSGIDRSNVWPTNLDALWRAKSKEIARDtRNEEEEGKR 197 555555666666666667778888889999999996666665555 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MIKSLVSEAD LKEAGAGSAS RDEPANKISS NPNLSRSSTP WPRLKDPRIV RVSRAFGGKD 60 RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ EKLGLNQPSK VVDWLLDAAK HEIDELPPLP 120 MPPPGTFGLN HPSLVLTSSH DDQTNAHPQL SHNHRGEGPS SGIDRSNVWP TNLDALWRAK 180 SKEIARDTRN EEEEGKRKDN LGISDDQKQA GNNIDGNSSN TFLTRGSTTN PPFFPGLLNS 240 STNMPYDYQN WDHPHQTSSF PLSQLGSHGF QSQTTDLHNF LNVLSLPSTL SLSTTQSYFP 300 SHNAAATGEI DPRQFNHLQL LNSSSSTSTS QNLLPNSLST PALYPSSQTL RAPHLSMVTK 360 LVHSSNNTGS GHQPNNDQGP LHR

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MIKSLVSEAD LKEAGAGSAS RDEPANKISS NPNLSRSSTP WPRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ EKLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPPPGTFGLN HPSLVLTSSH DDQTNAHPQL SHNHRGEGPS SGIDRSNVWP TNLDALWRAK  180
SKEIARDTRN EEEEGKRKDN LGISDDQKQA GNNIDGNSSN TFLTRGSTTN PPFFPGLLNS  240
STNMPYDYQN WDHPHQTSSF PLSQLGSHGF QSQTTDLHNF LNVLSLPSTL SLSTTQSYFP  300
SHNAAATGEI DPRQFNHLQL LNSSSSTSTS QNLLPNSLST PALYPSSQTL RAPHLSMVTK  360
LVHSSNNTGS GHQPNNDQGP LHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	8e-42	TCP family protein