PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004662.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 377aa MW: 39428.8 Da PI: 6.3133

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004662.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.3	3.3e-35	90	191	3	102
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg.kaa 91 +++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + s s++ +ss+ PCP004662.1 90 TRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkiP-TTASTSVEDNSSPpY-- 184 6899***********************************************************88888444333333321.111111111111111.. PP TCP 92 ksaakskksqk 102 ++kk+++ PCP004662.1 185 ----STKKRKR 191 ....1111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MTSYSEDQDD DGGASDLSTS TGDLGDNNHT NRDGVVSTQL HYDETTEFHS LKEEPIDSDP 60 PQPPQAYPIG MVPVAMPMPM SVPSAVSTLT RRSSTKDRHT KVEGRGRRIR IPATCAARIF 120 QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT TASTSVEDNS 180 SPPYSTKKRK RPSNSEFVDV KNDAVSQSSG LAPVSPSVPQ GLVPVWAVGG TGLMVPANAL 240 WIGPVGSVAG PSGQPQIWAL SPTMTPVFNM AGASRPISSF VANSGGGGAG VVDVRAPSPA 300 LSNSAANTST VGPRAAMWSS TTMAPSVSSS SHNSNGSGNG ATTKSQMLRD FSLQIYDKQE 360 LQLMGRPVGP ENHNQTQ

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MTSYSEDQDD DGGASDLSTS TGDLGDNNHT NRDGVVSTQL HYDETTEFHS LKEEPIDSDP  60
PQPPQAYPIG MVPVAMPMPM SVPSAVSTLT RRSSTKDRHT KVEGRGRRIR IPATCAARIF  120
QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT TASTSVEDNS  180
SPPYSTKKRK RPSNSEFVDV KNDAVSQSSG LAPVSPSVPQ GLVPVWAVGG TGLMVPANAL  240
WIGPVGSVAG PSGQPQIWAL SPTMTPVFNM AGASRPISSF VANSGGGGAG VVDVRAPSPA  300
LSNSAANTST VGPRAAMWSS TTMAPSVSSS SHNSNGSGNG ATTKSQMLRD FSLQIYDKQE  360
LQLMGRPVGP ENHNQTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-66	TCP family protein