PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004603.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 890aa MW: 101468 Da PI: 8.2681

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004603.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	107	129	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H PCP004603.1 107 CSydGCGKTFIDAGALRKHSHVH 129 77889**************8776 PP
2	zf-C2H2	15.1	6.9e-05	134	158	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H PCP004603.1 134 YVCHyeGCGKKFLDSSKLKRHFLIH 158 9********************8877 PP
3	zf-C2H2	20.9	9.3e-07	164	188	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk Fs nL++H++tH PCP004603.1 164 YVCPheGCGKAFSLDFNLRSHMKTH 188 99**********************9 PP
4	zf-C2H2	15	7.3e-05	194	218	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi H PCP004603.1 194 HICPypDCGKRYAHEYKLKNHIVAH 218 679999****************885 PP
5	zf-C2H2	13.7	0.00019	258	283	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C+k + + + Lk H+r+ H PCP004603.1 258 YACPydGCNKAYIHEYKLKLHLRReH 283 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence
MDSQFHHNYF ERRPIFRSKT PAVKWFKECG NSVFIVSEKS LRFLGFVVPD YIRNKVRVPQ 60 DVVATGGRCS LMKWVTADTL KALNEKSKKT VAPEPEPEPT TEVLFLCSYD GCGKTFIDAG 120 ALRKHSHVHG EKQYVCHYEG CGKKFLDSSK LKRHFLIHTG ERDYVCPHEG CGKAFSLDFN 180 LRSHMKTHSQ ENYHICPYPD CGKRYAHEYK LKNHIVAHHE KMPIDEPVSV PKYATPPAEK 240 QIRTPKPPYS NASLDRPYAC PYDGCNKAYI HEYKLKLHLR REHPGHVSDE NAENAANNAH 300 NEMDEASDQD VYAGKRVNGK SQKQNRPKPN LKYPPAKVAQ RKGSAPSPAP MNTMKKPWPI 360 KEDVYDEEDS EETEEDRDNK QQEKASASSF ESAQDEAVAI KDKYANKQKL MRRCVDQYKI 420 ELRNPCRQGK KLLVLDIDYT LFDHRSTAGN PLQLMRPFLH EFLTAAYAKY GIGLQPAGFD 480 PLDPYANITV TWDFLQQSES TSDIKVSIYN FQQFRHVDRP GWKLGWIWKG DEVIWNMWGA 540 EAIYQGNCSR FKGAPERPHC CEKEPVIIDL LPGTPFNKQF SNCCKGGELS SMIQDSSKFL 600 SAFRMNVGAF SNNSTNINMP DNFTLGLPGY TCGPPVQVQP TKTSQDGRRW TETLETWNVT 660 CMYSQFRASP SPKCCVSLSS FYNSTIAKCP RCSCGCQGLP GAKCVKPGDE LQLPGDRETE 720 EPSPLVTCTR HMCPIGIHWH VKESYKEYWR VKITITNYNF VKNYSDWTLV VQHPNLQSLT 780 QLFSFNYHPL GQYGNINDTG MFWGINYYND MLLSTGKNGN VQTEMVLHKD EGVFTFREGW 840 TFPRRISFNG DECVMPSPDE YPRLPNRAHR AAASRPSIVV FASLLILAAL

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence

MDSQFHHNYF ERRPIFRSKT PAVKWFKECG NSVFIVSEKS LRFLGFVVPD YIRNKVRVPQ  60
DVVATGGRCS LMKWVTADTL KALNEKSKKT VAPEPEPEPT TEVLFLCSYD GCGKTFIDAG  120
ALRKHSHVHG EKQYVCHYEG CGKKFLDSSK LKRHFLIHTG ERDYVCPHEG CGKAFSLDFN  180
LRSHMKTHSQ ENYHICPYPD CGKRYAHEYK LKNHIVAHHE KMPIDEPVSV PKYATPPAEK  240
QIRTPKPPYS NASLDRPYAC PYDGCNKAYI HEYKLKLHLR REHPGHVSDE NAENAANNAH  300
NEMDEASDQD VYAGKRVNGK SQKQNRPKPN LKYPPAKVAQ RKGSAPSPAP MNTMKKPWPI  360
KEDVYDEEDS EETEEDRDNK QQEKASASSF ESAQDEAVAI KDKYANKQKL MRRCVDQYKI  420
ELRNPCRQGK KLLVLDIDYT LFDHRSTAGN PLQLMRPFLH EFLTAAYAKY GIGLQPAGFD  480
PLDPYANITV TWDFLQQSES TSDIKVSIYN FQQFRHVDRP GWKLGWIWKG DEVIWNMWGA  540
EAIYQGNCSR FKGAPERPHC CEKEPVIIDL LPGTPFNKQF SNCCKGGELS SMIQDSSKFL  600
SAFRMNVGAF SNNSTNINMP DNFTLGLPGY TCGPPVQVQP TKTSQDGRRW TETLETWNVT  660
CMYSQFRASP SPKCCVSLSS FYNSTIAKCP RCSCGCQGLP GAKCVKPGDE LQLPGDRETE  720
EPSPLVTCTR HMCPIGIHWH VKESYKEYWR VKITITNYNF VKNYSDWTLV VQHPNLQSLT  780
QLFSFNYHPL GQYGNINDTG MFWGINYYND MLLSTGKNGN VQTEMVLHKD EGVFTFREGW  840
TFPRRISFNG DECVMPSPDE YPRLPNRAHR AAASRPSIVV FASLLILAAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-130	C2H2 family protein