PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004409.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 312aa MW: 35298.2 Da PI: 8.5381

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004409.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	154	173	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ PCP004409.1 154 FACSICSKTFNRYNNMQMHM 173 78*****************9 PP
2	zf-C2H2	11.5	0.00093	238	260	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ PCP004409.1 238 FMCRKCAKTFAVKGDWRTHEKNC 260 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MGLWNHHVED QNLCFQAPPF IEWLKPSSSF SSSSTSSSSS PCLSEHGTIQ CLPLLSQFTD 60 TKLVKVEDRG VQEEGFGVKE EQMEKVTVAL HIGLPNSTSS TGDKSETYDE NKKVLNLKEE 120 QVVMKKSIHG CSFKAESRFW IPTPAQVLVG PMQFACSICS KTFNRYNNMQ MHMWGHGSEY 180 RKGPDSLKGT QPAAMLRLPC YCCAQGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFMC 240 RKCAKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS PHPSLDGFHE 300 DEKECVTGSE EE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-123	C2H2 family protein