PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004331.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 546aa    MW: 59734.7 Da    PI: 5.7683
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004331.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.91.2e-1321565201374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgd..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lL++cAe v+ g+l+la +l+++++ l +   +   + ++a yf  AL++r+++  ++ +    + + s   + e+   +++f+e++P+lkf+h+
  PCP004331.1 156 LVHLLVTCAESVQRGELTLAGSLIETMQALMTRVNTscGIGKVAGYFIDALSRRIFS--PQSF---GSAAGS---THENELLYHYFYEACPYLKFAHF 245
                  68****************************66665422799****************..3322...222222...4556678899************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L
  PCP004331.1 246 TANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWML 343
                  ************************************************************************************************** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+p+Ea+aVn+++qlhrll ++ + +s+++ +L+ +++l+Pk+v+vveqeadhn++ Fl+rf+eal+yys++fdslea    + + ++++ +++++r
  PCP004331.1 344 QVSPKEAVAVNSIMQLHRLLGSDPNRNSPIEMMLSWIRNLNPKIVTVVEQEADHNKPGFLDRFTEALYYYSTMFDSLEAC---AMQPEKTLAEMYIQR 438
                  *****************************************************************************999...468888899999*** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+nvv+cega+r+erhe l+kWr rl++aGF+p++l+++a kqa++ll  ++ +gyrvee++g+l+lgW++ pL+++SaW+
  PCP004331.1 439 EICNVVCCEGAARVERHEPLSKWRTRLGQAGFSPLHLGSNAFKQASMLLTLFSAEGYRVEENQGCLTLGWHSSPLIAASAWQ 520
                  *********************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MGPYGSTTCS GVSSSASSSS SSSVTKSPAE IDGYLADAGY KVRASDLRHV AQRLEHLETV  60
MVNSPSDLSQ LASDAVLYNP SDIATWVDSL LSEFNHQPLM SLPSDLDFPD GAVINNPAAL  120
SGETWTDNSS VISAVPQQNH QLTVVTAMEE DSGIRLVHLL VTCAESVQRG ELTLAGSLIE  180
TMQALMTRVN TSCGIGKVAG YFIDALSRRI FSPQSFGSAA GSTHENELLY HYFYEACPYL  240
KFAHFTANQA ILEAFHGHDC VHVIDFNLMH GLQWPALIQA LALRPGGPPL LRLTGIGPPS  300
PDGRDSLREI GLRLAELARS VNVRFAFRGV AASRLEDVKP WMLQVSPKEA VAVNSIMQLH  360
RLLGSDPNRN SPIEMMLSWI RNLNPKIVTV VEQEADHNKP GFLDRFTEAL YYYSTMFDSL  420
EACAMQPEKT LAEMYIQREI CNVVCCEGAA RVERHEPLSK WRTRLGQAGF SPLHLGSNAF  480
KQASMLLTLF SAEGYRVEEN QGCLTLGWHS SPLIAASAWQ VMSMTEATTN HQPVGILSQN  540
NNANHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-148GRAS family protein