PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP004033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29140.4 Da PI: 10.0123 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.6 | 7.6e-19 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+ tf kRr+g++KK +ELS+LCd++++ ii+s+ PCP004033.1 11 ISNDSARKATFKKRRKGLMKKVSELSTLCDVQACAIIYSP 50 9**************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence |
MTRTKVKLTY ISNDSARKAT FKKRRKGLMK KVSELSTLCD VQACAIIYSP YDSQPELWPS 60 PLGVQRVLAQ FKTMPEMEQS KKMVNQESFL RQRIAKANEQ LKKQRKDNRE KEMTRVMFQS 120 LMGKSQLHGL GMVDLNDLGW LIDQNLKEID NRMKNLNEQD SKSQVQLQPT ALPVAAATAA 180 ERGVERQQGF ELNNNVGTAV QRQQQPFFMD MMNVPQDHQQ QQMAGIGGGY EMNMLPFAAD 240 QSQINAIWSN SSFYP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 22 | 26 | KKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-68 | M-type_MADS family protein |