PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003615.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 457aa MW: 50752.5 Da PI: 6.793

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003615.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++ +++G g+W++ ++ g++R++k+c++rw +yl PCP003615.1 29 KGPWTPEEDQKLVEYLERYGHGSWRALPKLAGLNRCGKSCRLRWTNYL 76 79********************************************97 PP
2	Myb_DNA-binding	53.9	4.2e-17	82	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ +lG++ W++Ia+ ++ gRt++++k++w+++l PCP003615.1 82 RGNFSQEEEQTIINLHSLLGNK-WSAIASNLP-GRTDNEIKNFWNTHL 127 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MMGRSSATAS AWCDDDQDEK SSTDTMIKKG PWTPEEDQKL VEYLERYGHG SWRALPKLAG 60 LNRCGKSCRL RWTNYLRPDI KRGNFSQEEE QTIINLHSLL GNKWSAIASN LPGRTDNEIK 120 NFWNTHLKKK LFQMGIDPVT HKPISTTGTN IDHHQYLMII NQILSSLAPQ LLAASSSSSS 180 CSSTSTCNPL MLNNPWEWDR INNINNNVNM NALLGLHLSD AKTEVLQTIL QQQLLSTGSS 240 PPNNNNYVEA ALNYLLGSSS YSYNNSVPDD HHQQICGQYH SHHHPQSFSV NIGAPVHTNT 300 QFSHLIIPNI IPKPPHLLDH DQKPLPVYVA SSAGPASNLI YTAGTMMNKI GQQLGGPSSG 360 SYSYVTPTVT SDHHQVPLLV PSPECSAANI NLMTGNKIVD TSTNNPNTNQ DHVISDPNSP 420 STSTTSTTFE AWGDLMDHHD ESTNHSYWKH IILDRKY

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MMGRSSATAS AWCDDDQDEK SSTDTMIKKG PWTPEEDQKL VEYLERYGHG SWRALPKLAG  60
LNRCGKSCRL RWTNYLRPDI KRGNFSQEEE QTIINLHSLL GNKWSAIASN LPGRTDNEIK  120
NFWNTHLKKK LFQMGIDPVT HKPISTTGTN IDHHQYLMII NQILSSLAPQ LLAASSSSSS  180
CSSTSTCNPL MLNNPWEWDR INNINNNVNM NALLGLHLSD AKTEVLQTIL QQQLLSTGSS  240
PPNNNNYVEA ALNYLLGSSS YSYNNSVPDD HHQQICGQYH SHHHPQSFSV NIGAPVHTNT  300
QFSHLIIPNI IPKPPHLLDH DQKPLPVYVA SSAGPASNLI YTAGTMMNKI GQQLGGPSSG  360
SYSYVTPTVT SDHHQVPLLV PSPECSAANI NLMTGNKIVD TSTNNPNTNQ DHVISDPNSP  420
STSTTSTTFE AWGDLMDHHD ESTNHSYWKH IILDRKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	4e-71	MYB family protein