PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003564.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 2078aa MW: 234848 Da PI: 6.3221

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003564.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	172.2	5.8e-54	1897	2000	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv PCP003564.1 1897 QLQTFWTNQyqeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 1992 89****998999****************************************************************************** PP NF-YC 94 divprdel 101 divpr++l PCP003564.1 1993 DIVPREDL 2000 ***987 PP

Sequence ? help Back to Top
Protein Sequence Length: 2078 aa Download sequence
MHSFGYRANA LLTFAVTILA LMCAMASISD NLNHPTPTTQ VQVLNINWFQ KQPNGNEEVS 60 MTMNISADLQ SLFTWNTKQV FVFLAAEYGT PKNSLNQISL WDGILPTKEH AKFWIHTSNK 120 YRFIDQKPRL KVVGVRSSTC SLHTTATKRA GTRKKAKEVA LVLSPPIAPP PPLNITTAPK 180 VTTAFDPDHH PQTLPVSARR EQEEGEEAPA LQEPEKKKPK LKVVGVPFLD PDATESSSDD 240 DYTPPITNGR KRKEVEIVYE IKLLRKNPIS KTRRKIIKDQ KNEKELVGEK IVINKEIGSS 300 SCGEKVKESS STSSTAGKKK TTTKGKNKTE TKKKKKTTEV VDVLWEIPGE IPDLDLLERE 360 KDWLLYRFFD GVPEYCEDIP PEVKGSYGFR VRNQVKVCSW LCYTDDHICQ TIELSVIHQR 420 GVGDGGMVFY GYDEMSFCRE EMSNQNPSSG DRLRTSWTPA MERYFIDLML DQVHRGNRLG 480 HTFNKQAWND MLMMFNGNFG TPYDMNTLKS HYTSLWRQFN DIKNLLDQNG FSWDNTRQMV 540 IADKYAWDAY VKVHPDAQVY RNKALMTFND LCLIYAHTQA DGRYSLSSHD IDFDDEIQGM 600 IDGAGVISPT PASKVKRNAD WKPAMDEFFL NLMLDQLEKG SKMNNTFTKQ AWKDMVTLFK 660 KKFGSHYQTR FLKQLHKKLL KYYTDVRSIL ARKGFYWDTN RQMIVADDHV WGNYIQALPD 720 ARVYRKKPLL NYQDLNSIYA SEISNGLLNH LDQDEEEREG QSFSFSGNGH LASFEDLDSE 780 GLDFMTDGED IQSHGNDIFS RKDWTPPMDR YLIDLLLEQL QKANKIDYSL DDQAWVDVLV 840 LFKERFGLQY DKDLLRSRYK SLEKQYHDTK DLLDRRGFWW DETQQMVTAY DDVWDAYIKE 900 CPDTEAYRTK SKPNYNDLCL IYGNSNLGER YNQSGQAMGC NGDANYNHSY HRRTDWTPPM 960 DRYFIDLILE QVRNGSMVNQ KFSKLAWTDM VSKFRAQFGS QHDKDVLKSR FVNLRKRFND 1020 MKTLLDQSGF TWDEMQQRIT ADGDLWDAHV KVRPDARSYR NRTLPNFNDL CLIYGNEDSL 1080 KRESSSNHSM DAEDDDPRVN VGDETQQTIF AEVDDVWDAY VKDHPYQPAY GNSILDYNDS 1140 TMINGNGVAD GRSSYLSTEM GKTGFYMTFG GLQSRTMDYE TSIQRKKRKP TASSTSASKR 1200 VQRTIKEEVQ ETLDEKPHRV NGFVGNEEDK DCCSIERIVD ALETVPDMND ELFLEASQIL 1260 EDERKAKMFV AMDVTARQKW SLIATAAKTP PCSSAAVTHS DGLFNYLYLH FCLFRQNPFL 1320 SLSSLSLILL LLFHILIKTA QDHFSLVTTK LVFALDLTPS MAAVTLLALG NGAPDVFASI 1380 AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFPLK PAPFVRDVMF YLTAALFLFY 1440 VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGMGGGGKES RVEAGSVGDI EIQRGLVAPD 1500 SRIGHVLESS EDRKGSFGVG RALGMISRAW EIPISFLLKL TIPQASPSEW SRFYMSANIA 1560 LCPLALLYAC NSFMPFNHPV VFLLSNTHLP LWLVILLASS SLALLHYAVE KEPPKTEQLP 1620 VLLIAFVMSV FWISTTAGEL LNCLAALGTL LELPPALLGL TVLAWGNSVG DLVADVAVAK 1680 AGHPAMAMAG CFAGPMFNML IGLGTALVIQ TYDVYPEAYE LQFHVGIVIA FVFLLLSLMG 1740 SLLVITWCRF RVPRFWGFCL VGLYVVFMAV SLVLDNLQSS AEAAPTACLI KETPSCSELM 1800 SFSVSAGRAD LQSSTRMDPQ GHHQPQSMGM VGSGAQLTYG SNPYQHNQMV GSPNPGSVAA 1860 TVGAMQSASQ SPGAQLAQHQ LAYQHIHQQQ QQQLQQQLQT FWTNQYQEID KVTDFKNHSL 1920 PLARIKKIMK ADEDVRMISA EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA 1980 AITRTDIFDF LVDIVPREDL KDEVLASIPR GTVSVGGPDD ALPYCYMPPQ HAPQVGDPGM 2040 IMGKPMMDPS MYAQQSHPYM TQPMWQQAPD QQQSPSDH

Sequence ? help Back to Top

Protein Sequence Length: 2078 aa Download sequence

MHSFGYRANA LLTFAVTILA LMCAMASISD NLNHPTPTTQ VQVLNINWFQ KQPNGNEEVS  60
MTMNISADLQ SLFTWNTKQV FVFLAAEYGT PKNSLNQISL WDGILPTKEH AKFWIHTSNK  120
YRFIDQKPRL KVVGVRSSTC SLHTTATKRA GTRKKAKEVA LVLSPPIAPP PPLNITTAPK  180
VTTAFDPDHH PQTLPVSARR EQEEGEEAPA LQEPEKKKPK LKVVGVPFLD PDATESSSDD  240
DYTPPITNGR KRKEVEIVYE IKLLRKNPIS KTRRKIIKDQ KNEKELVGEK IVINKEIGSS  300
SCGEKVKESS STSSTAGKKK TTTKGKNKTE TKKKKKTTEV VDVLWEIPGE IPDLDLLERE  360
KDWLLYRFFD GVPEYCEDIP PEVKGSYGFR VRNQVKVCSW LCYTDDHICQ TIELSVIHQR  420
GVGDGGMVFY GYDEMSFCRE EMSNQNPSSG DRLRTSWTPA MERYFIDLML DQVHRGNRLG  480
HTFNKQAWND MLMMFNGNFG TPYDMNTLKS HYTSLWRQFN DIKNLLDQNG FSWDNTRQMV  540
IADKYAWDAY VKVHPDAQVY RNKALMTFND LCLIYAHTQA DGRYSLSSHD IDFDDEIQGM  600
IDGAGVISPT PASKVKRNAD WKPAMDEFFL NLMLDQLEKG SKMNNTFTKQ AWKDMVTLFK  660
KKFGSHYQTR FLKQLHKKLL KYYTDVRSIL ARKGFYWDTN RQMIVADDHV WGNYIQALPD  720
ARVYRKKPLL NYQDLNSIYA SEISNGLLNH LDQDEEEREG QSFSFSGNGH LASFEDLDSE  780
GLDFMTDGED IQSHGNDIFS RKDWTPPMDR YLIDLLLEQL QKANKIDYSL DDQAWVDVLV  840
LFKERFGLQY DKDLLRSRYK SLEKQYHDTK DLLDRRGFWW DETQQMVTAY DDVWDAYIKE  900
CPDTEAYRTK SKPNYNDLCL IYGNSNLGER YNQSGQAMGC NGDANYNHSY HRRTDWTPPM  960
DRYFIDLILE QVRNGSMVNQ KFSKLAWTDM VSKFRAQFGS QHDKDVLKSR FVNLRKRFND  1020
MKTLLDQSGF TWDEMQQRIT ADGDLWDAHV KVRPDARSYR NRTLPNFNDL CLIYGNEDSL  1080
KRESSSNHSM DAEDDDPRVN VGDETQQTIF AEVDDVWDAY VKDHPYQPAY GNSILDYNDS  1140
TMINGNGVAD GRSSYLSTEM GKTGFYMTFG GLQSRTMDYE TSIQRKKRKP TASSTSASKR  1200
VQRTIKEEVQ ETLDEKPHRV NGFVGNEEDK DCCSIERIVD ALETVPDMND ELFLEASQIL  1260
EDERKAKMFV AMDVTARQKW SLIATAAKTP PCSSAAVTHS DGLFNYLYLH FCLFRQNPFL  1320
SLSSLSLILL LLFHILIKTA QDHFSLVTTK LVFALDLTPS MAAVTLLALG NGAPDVFASI  1380
AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFPLK PAPFVRDVMF YLTAALFLFY  1440
VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGMGGGGKES RVEAGSVGDI EIQRGLVAPD  1500
SRIGHVLESS EDRKGSFGVG RALGMISRAW EIPISFLLKL TIPQASPSEW SRFYMSANIA  1560
LCPLALLYAC NSFMPFNHPV VFLLSNTHLP LWLVILLASS SLALLHYAVE KEPPKTEQLP  1620
VLLIAFVMSV FWISTTAGEL LNCLAALGTL LELPPALLGL TVLAWGNSVG DLVADVAVAK  1680
AGHPAMAMAG CFAGPMFNML IGLGTALVIQ TYDVYPEAYE LQFHVGIVIA FVFLLLSLMG  1740
SLLVITWCRF RVPRFWGFCL VGLYVVFMAV SLVLDNLQSS AEAAPTACLI KETPSCSELM  1800
SFSVSAGRAD LQSSTRMDPQ GHHQPQSMGM VGSGAQLTYG SNPYQHNQMV GSPNPGSVAA  1860
TVGAMQSASQ SPGAQLAQHQ LAYQHIHQQQ QQQLQQQLQT FWTNQYQEID KVTDFKNHSL  1920
PLARIKKIMK ADEDVRMISA EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA  1980
AITRTDIFDF LVDIVPREDL KDEVLASIPR GTVSVGGPDD ALPYCYMPPQ HAPQVGDPGM  2040
IMGKPMMDPS MYAQQSHPYM TQPMWQQAPD QQQSPSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	336	KKKTTTKGKNKTETKKKKK
2	1970	1976	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	6e-78	NF-YC family protein