PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003522.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 361aa MW: 40792.3 Da PI: 6.1026

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003522.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.2e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++q+G g+W++ ++ g++R++k+c++rw +yl PCP003522.1 14 KGPWTPEEDQKLVQYIEQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia ++ gRt++++k++w+++l PCP003522.1 67 RGKFSEEEEQTILHLHSILGNK-WSAIATHLD-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGRSPCSDES GLKKGPWTPE EDQKLVQYIE QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DLFSSLSQLL ALANLQDLMQ QYQPVDHINQ HAATLQADQA VQLSKLQYMQ 180 HLLQSVPYTS NTDNYRHNRN TEMEMEMDDQ AFNLLNSINI SPIKENPNFN SPQLENPSSF 240 SDHGYGRNSS QPLHQHQTLL PYDLADPQVP FSSLPSLNNS DHEMGQGSNF KMVSSQENNL 300 PDESPWFNNL LSPTAPSIPP SIPPTSNVPG DACCSSSTYG GRSSTSSSYW PELFLEDANY 360 G

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGRSPCSDES GLKKGPWTPE EDQKLVQYIE QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DLFSSLSQLL ALANLQDLMQ QYQPVDHINQ HAATLQADQA VQLSKLQYMQ  180
HLLQSVPYTS NTDNYRHNRN TEMEMEMDDQ AFNLLNSINI SPIKENPNFN SPQLENPSSF  240
SDHGYGRNSS QPLHQHQTLL PYDLADPQVP FSSLPSLNNS DHEMGQGSNF KMVSSQENNL  300
PDESPWFNNL LSPTAPSIPP SIPPTSNVPG DACCSSSTYG GRSSTSSSYW PELFLEDANY  360
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-93	MYB family protein