PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP003446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 25937.9 Da PI: 9.288 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + PCP003446.1 34 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.1e-16 | 88 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a +++G++ W+tIar ++ gRt++ +k++w++ PCP003446.1 88 SFSQAEDETILAAQARFGNR-WATIARLLP-GRTDNAVKNHWNST 130 699*****************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence |
MEALNICSSS ASSSDTSSSE SSLPRNPNKP ERIKGPWSAE EDRVLTRLVE RYGPRNWSLI 60 SRYIKGRSGK SCRLRWCNQL SPSVQHRSFS QAEDETILAA QARFGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRVRGDQL TEVGSFLGAG GNVGSNEGMS TSSVSGSLVN GSMEFDPLTE 180 LTLAPPGIGS ASGGAMVAEQ RRNNESVPAG FWDAMRDVIA REVRDYVTTT FSEPSGLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-60 | MYB family protein |